BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000130.1_g1530.1
         (325 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    65   1e-12

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 65.1 bits (157), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query: 142 DGKWKLTKGLMVKVRGKKCCTLYRTQVKLCKGELNAVE--KDSSIDLWHRRLGHMSEKGL 199
           +G  K+ KG    ++G +  +LY  Q  +  GE N  E  KD +  LWH RL HMS++G+
Sbjct: 26  EGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDET-RLWHSRLAHMSQRGM 84

Query: 200 QILPKRQDLPNMKCINLNTCSHCLIGKQHRVSFQRNASKRKFSVLELVYSDVCGPLKV 257
           ++L K+  L + K  +L  C  C+ GK HRV+F       K + L+ V+SD+ G   V
Sbjct: 85  ELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK-NPLDYVHSDLWGAPSV 141

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