BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1540.1
(240 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 103 5e-25
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 103 5e-25
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 82 3e-19
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 103 bits (257), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 70/106 (66%)
Query: 135 WLKAMQDEIESLCKNNTFKLVENPKNKKILKNKWVFKIRTEERNSQPRYKARLVVKGFGQ 194
W AM DEI ++ +T+++ P NKK + KWV+KI+ + RYKARLV KG+ Q
Sbjct: 98 WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157
Query: 195 KKGIDFDEIFSPMVNMSSIRLVLGLVASMNLEIEQLDLKTAFLHGD 240
++GIDF E FSP+ ++S++L+L + A N + QLD+ AFL+GD
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGD 203
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 103 bits (257), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 70/106 (66%)
Query: 135 WLKAMQDEIESLCKNNTFKLVENPKNKKILKNKWVFKIRTEERNSQPRYKARLVVKGFGQ 194
W AM DEI ++ +T+++ P NKK + KWV+KI+ + RYKARLV KG+ Q
Sbjct: 98 WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157
Query: 195 KKGIDFDEIFSPMVNMSSIRLVLGLVASMNLEIEQLDLKTAFLHGD 240
++GIDF E FSP+ ++S++L+L + A N + QLD+ AFL+GD
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGD 203
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 82.4 bits (202), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Query: 135 WLKAMQDEIESLCKNNTFKLVENPKNKKILKNKWVFKIRTEERNSQPRYKARLVVKGFGQ 194
W +AMQ+E+++L +N T+ LV P N+ IL KWVFK + + R KARLV KGF Q
Sbjct: 40 WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99
Query: 195 KKGIDFDEIFSPMVNMSSIRLVLGLVASMNLEIEQ 229
++GI F E +SP+V ++IR +L + + LE+ Q
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNV--AQQLEVGQ 132