BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1620.1
(533 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00350.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:39605-41... 705 0.0
ATCG00340.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:37375-39... 351 e-112
>ATCG00350.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:39605-41857
REVERSE LENGTH=750 | 201606
Length = 750
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/421 (86%), Positives = 372/421 (88%), Gaps = 28/421 (6%)
Query: 89 YFHEIGALVFAMSMLFAGWFHYHKAAPKLAWFQDVESRLNHHLAGLLGLGSLSWAGHQVH 148
Y IGALVFA MLFAGWFHYHKAAPKLAWFQDVES LNHHLAGLLGLGSLSWAGHQVH
Sbjct: 157 YCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVH 216
Query: 149 ----------------------------DLLAQLYPSIAEGATPFFTLNWSKYAEFLTFR 180
DLLAQLYPS AEGATPFFTLNWSKY+EFLTFR
Sbjct: 217 VSLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFR 276
Query: 181 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKDILEAHKGPFTGQGHE 240
GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHG+KDILEAHKGPFTGQGH+
Sbjct: 277 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGPFTGQGHK 336
Query: 241 GLYEILTTSWHAQLSLNLAMLGSLTIFVALYMYSMPPYPYLATDYGTQLSLFTHHMWIGG 300
GLYEILTTSWHAQLSLNLAMLGSLTI VA +MYSMPPYPYLATDY TQLSLFTHHMWIGG
Sbjct: 337 GLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGG 396
Query: 301 FLIVGAAAHAAIFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNCACIFQGFHSFGLFIHN 360
FLIVGAAAHAAIFMVRDYDPT RYNDLLDRVLRHRDAIISHLN CIF GFHSFGL+IHN
Sbjct: 397 FLIVGAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHN 456
Query: 361 DTMSALGRPQDMFSDTAIQLQPVFTQWVQNTHALAPGATAPGATTSTSLTWGGGGLVAVG 420
DTMSALGRPQDMFSDTAIQLQPVF QW+QNTHALAPG TAPG T STSLTWGGG LVAVG
Sbjct: 457 DTMSALGRPQDMFSDTAIQLQPVFAQWIQNTHALAPGVTAPGETASTSLTWGGGELVAVG 516
Query: 421 GKVTLLPIPLGTADFLVHHINALTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGP 480
GKV LLPIPLGTADFLVHHI+A TIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGP
Sbjct: 517 GKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGP 576
Query: 481 G 481
G
Sbjct: 577 G 577
Score = 181 bits (458), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 1 MIILSPKPEVKILVDRDPVKTSFEEWARLGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
MII SP+PEVKILVDRDP+KTSFEEWA+ GHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1 MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
Query: 61 SDLEEISRKVFSAHFGQVSIIFLWLSGKYFH 91
SDLEEISRKVFSAHFGQ+SIIFLWLSG YFH
Sbjct: 61 SDLEEISRKVFSAHFGQLSIIFLWLSGMYFH 91
>ATCG00340.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:37375-39579
REVERSE LENGTH=734 | 201606
Length = 734
Score = 351 bits (900), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/419 (45%), Positives = 254/419 (60%), Gaps = 49/419 (11%)
Query: 105 AGWFHYH-KAAPKLAWFQDVESRLNHHLAGLLGLGSLSWAGHQVH-------------DL 150
GW H K P+++WF++ ESRLNHHL+GL G+ SL+W GH VH +
Sbjct: 152 GGWLHLQPKWKPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNN 211
Query: 151 LAQLYPSIAEGATPFFTLNWSKYAE------------------FLTFRGGLDPVTGGLWL 192
+ P +G P FT W+ YA+ LT GG P T LWL
Sbjct: 212 FLNVLPH-PQGLGPLFTGQWNLYAQNPDSSSHLFGTSQGSGTAILTLLGGFHPQTQSLWL 270
Query: 193 TDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKDILEAHKGP--FTGQGHEGLYEILTTSW 250
TD+AHHHLAIAILFLIAGHMYRTN+GIGH +KD+LEAH P G+GH+GLY+ + S
Sbjct: 271 TDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHKGLYDTINNSI 330
Query: 251 HAQLSLNLAMLGSLTIFVALYMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHA 310
H QL L LA LG +T VA +MYS+P Y ++A D+ TQ +L+THH +I GF++ GA AH
Sbjct: 331 HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHG 390
Query: 311 AIFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNCACIFQGFHSFGLFIHNDTMSALGRPQ 370
AIF +RDY+P +++L R+L H++AIISHL+ A +F GFH+ GL++HND M A G P+
Sbjct: 391 AIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPE 450
Query: 371 DMFSDTAIQLQPVFTQWVQNTHA--------LAPGATAPGATTSTSLTWGGGGLVAVGGK 422
I ++P+F QW+Q+ H L + P S+ W G L A+
Sbjct: 451 KQ-----ILIEPIFAQWIQSAHGKTSYGFDVLLSSTSGPAFNAGRSI-WLPGWLNAINEN 504
Query: 423 VTLLPIPLGTADFLVHHINALTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPG 481
L + +G DFLVHH AL +H T LIL+KG L AR S+L+PDK + G+ FPCDGPG
Sbjct: 505 SNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPG 563
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 28 RLGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQVSIIFLWLS 86
R FS+ +A+ P TT IW A AHDF+SH EE + + +F++HFGQ++IIFLW S
Sbjct: 4 RFPRFSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTS 62
Query: 87 GKYFH 91
G FH
Sbjct: 63 GNLFH 67