BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1670.1
(1208 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 247 2e-67
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 247 2e-67
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 135 3e-36
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 91 7e-20
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 57 4e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 247 bits (631), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 201/355 (56%), Gaps = 29/355 (8%)
Query: 722 VSTHHMATRSKTGNLRPKYLPDFVT---------------NYSVCHPLPQCYLSILDLPS 766
V T H TR +P YL D+ +Y PL +L +
Sbjct: 31 VHTSHRRTR------KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAK 84
Query: 767 DPTCYTQAIKYPEWKTAMQEELEALHHNATWSLVPPSDSMNILGCKWVFKTKLKDDGTVE 826
+P+ Y +A ++ W AM +E+ A+ TW + + +GCKWV+K K DGT+E
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 827 RYKARLVAKGFHQLDGLDYSETFSPVVKSSTIRVVLTLAVTNKWQIQQLDVSNAFLHRVL 886
RYKARLVAKG+ Q +G+D+ ETFSPV K ++++++L ++ + + QLD+SNAFL+ L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 887 DEDVYMVQPPGFV----DVSRKNWVCHLHKSLYGLKQAPRAWFTRFATFLLDWGFQKSAT 942
DE++YM PPG+ D N VC+L KS+YGLKQA R WF +F+ L+ +GF +S +
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264
Query: 943 DHSMFVFQAHGATLVLLLYVDDIILTGSSTYLIQSLVQSLQQEFAMKDLGFLHYFLGIEV 1002
DH+ F+ L +L+YVDDII+ ++ + L L+ F ++DLG L YFLG+E+
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324
Query: 1003 AHLTSDGLLLTQNKYTLELLQKAELLDTKPISTPIIFGITITP---GDVSQLTAY 1054
A ++ G+ + Q KY L+LL + LL KP S P+ +T + GD AY
Sbjct: 325 AR-SAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 80/113 (70%)
Query: 1050 QLTAYSDSDWAGCLDSRKSTTGYCVFLGSTLVAWCSKKQSTVARSSTEAEYKALAIASSE 1109
QL +SD+ + C D+R+ST GYC+FLG++L++W SKKQ V++SS EAEY+AL+ A+ E
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500
Query: 1110 LLWLSYVITELGISTQSPFILKCDNVGARQLATNPVFHARTKHVEIDYHFVRD 1162
++WL+ EL + P +L CDN A +ATN VFH RTKH+E D H VR+
Sbjct: 501 MMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 247 bits (631), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 201/355 (56%), Gaps = 29/355 (8%)
Query: 722 VSTHHMATRSKTGNLRPKYLPDFVT---------------NYSVCHPLPQCYLSILDLPS 766
V T H TR +P YL D+ +Y PL +L +
Sbjct: 31 VHTSHRRTR------KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAK 84
Query: 767 DPTCYTQAIKYPEWKTAMQEELEALHHNATWSLVPPSDSMNILGCKWVFKTKLKDDGTVE 826
+P+ Y +A ++ W AM +E+ A+ TW + + +GCKWV+K K DGT+E
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 827 RYKARLVAKGFHQLDGLDYSETFSPVVKSSTIRVVLTLAVTNKWQIQQLDVSNAFLHRVL 886
RYKARLVAKG+ Q +G+D+ ETFSPV K ++++++L ++ + + QLD+SNAFL+ L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 887 DEDVYMVQPPGFV----DVSRKNWVCHLHKSLYGLKQAPRAWFTRFATFLLDWGFQKSAT 942
DE++YM PPG+ D N VC+L KS+YGLKQA R WF +F+ L+ +GF +S +
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264
Query: 943 DHSMFVFQAHGATLVLLLYVDDIILTGSSTYLIQSLVQSLQQEFAMKDLGFLHYFLGIEV 1002
DH+ F+ L +L+YVDDII+ ++ + L L+ F ++DLG L YFLG+E+
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324
Query: 1003 AHLTSDGLLLTQNKYTLELLQKAELLDTKPISTPIIFGITITP---GDVSQLTAY 1054
A ++ G+ + Q KY L+LL + LL KP S P+ +T + GD AY
Sbjct: 325 AR-SAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 80/113 (70%)
Query: 1050 QLTAYSDSDWAGCLDSRKSTTGYCVFLGSTLVAWCSKKQSTVARSSTEAEYKALAIASSE 1109
QL +SD+ + C D+R+ST GYC+FLG++L++W SKKQ V++SS EAEY+AL+ A+ E
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500
Query: 1110 LLWLSYVITELGISTQSPFILKCDNVGARQLATNPVFHARTKHVEIDYHFVRD 1162
++WL+ EL + P +L CDN A +ATN VFH RTKH+E D H VR+
Sbjct: 501 MMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 135 bits (340), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 93/157 (59%), Gaps = 25/157 (15%)
Query: 727 MATRSKTG--NLRPKYLPDFVTNYSVCHPLPQCYLSILDLPSDPTCYTQAIKYPEWKTAM 784
M TRSK G L PKY T + +P A+K P W AM
Sbjct: 1 MLTRSKAGINKLNPKYSLTITTT----------------IKKEPKSVIFALKDPGWCQAM 44
Query: 785 QEELEALHHNATWSLVPPSDSMNILGCKWVFKTKLKDDGTVERYKARLVAKGFHQLDGLD 844
QEEL+AL N TW LVPP + NILGCKWVFKTKL DGT++R KARLVAKGFHQ +G+
Sbjct: 45 QEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIY 104
Query: 845 YSETFSPVVKSSTIRVVLTLAVTNKWQIQQLDVSNAF 881
+ ET+SPVV+++TIR +L +A QQL+V +
Sbjct: 105 FVETYSPVVRTATIRTILNVA-------QQLEVGQSI 134
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 90.9 bits (224), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%)
Query: 1037 IIFGITITPGDVSQLTAYSDSDWAGCLDSRKSTTGYCVFLGSTLVAWCSKKQSTVARSST 1096
I G+ I + A+ DSDWAGC +R+STTG+C FLG +++W +K+Q TV+RSST
Sbjct: 150 IFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSST 209
Query: 1097 EAEYKALAIASSELLWLS 1114
E EY+ALA+ ++EL W S
Sbjct: 210 ETEYRALALTAAELTWSS 227
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 956 LVLLLYVDDIILTGSSTYLIQSLVQSLQQEFAMKDLGFLHYFLGIEVAHLTSDGLLLTQN 1015
+ LLLYVDDI+LTGSS L+ L+ L F+MKDLG +HYFLGI++ S GL L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPS-GLFLSQT 59
Query: 1016 KYTLELLQKAELLDTKPISTPI 1037
KY ++L A +LD KP+STP+
Sbjct: 60 KYAEQILNNAGMLDCKPMSTPL 81
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 11 TSHQIWNYLNKIYAQEFEAKQDLLRKQLHYIQRGNASISDYLRKIKSLADSLASVNDKVT 70
TS IW + + +A+ L +L G+ ++DY RK+K LADSL +V+ VT
Sbjct: 94 TSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVT 153
Query: 71 DREMIRITLSGLGKRFSQFVIAIDNRTDRITFPELRSKLLHHEQWL 116
DR ++ L+GL +F + I +R +F + + L E L
Sbjct: 154 DRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRL 199