BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000130.1_g1680.1
         (342 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    51   1e-07

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 125 VFKDIRTRQTIGYGVRRGKLYYLDLVSESSNKLRQALVVNNSEIKNKDEIWLWHRRLGHA 184
           V K ++  +TI  G R   LY L    E+          +N     KDE  LWH RL H 
Sbjct: 28  VLKVLKGCRTILKGNRHDSLYILQGSVETGE--------SNLAETAKDETRLWHSRLAHM 79

Query: 185 SFGYLKKLFPSLFIKCD-VSSFQ-CDVCALVKSHRASFPLNLSKSPTPFMILHSDVWGLS 242
           S   ++ L    F+    VSS + C+ C   K+HR +F      +  P   +HSD+WG  
Sbjct: 80  SQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAP 139

Query: 243 KV 244
            V
Sbjct: 140 SV 141

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