BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1690.1
(763 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 405 e-127
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 405 e-127
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 188 1e-54
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 103 2e-25
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 63 8e-12
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 405 bits (1040), Expect = e-127, Method: Compositional matrix adjust.
Identities = 209/546 (38%), Positives = 325/546 (59%), Gaps = 44/546 (8%)
Query: 207 PNQSVVEDVPEAPSEPPRKILPSRQTRGIPKPTYEPE-----LSSRVKYPMSQYVSDHRL 261
P+ ++ DVPE P R+TR KP Y + ++S + +SQ++S ++
Sbjct: 18 PSANIQNDVPE-----PSVHTSHRRTR---KPAYLQDYYCHSVASLTIHDISQFLSYEKV 69
Query: 262 SESNKSFVNQLSTVYIPNNVQEALSDSKWKAAMNEEMKSLQKNDTWELVDRPEDKNPVGC 321
S SF+ ++ P+ EA W AM++E+ +++ TWE+ P +K P+GC
Sbjct: 70 SPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGC 129
Query: 322 RWIYSVKYKADGTIERHKARLVAKGYTQTYGVDYTETFAPVAKINTVRVLLSLAANLDWP 381
+W+Y +KY +DGTIER+KARLVAKGYTQ G+D+ ETF+PV K+ +V+++L+++A ++
Sbjct: 130 KWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFT 189
Query: 382 LQQFDVKNAFLHGELLEEVYMDLPPG--------------CKIPQ-IHSQKE-------- 418
L Q D+ NAFL+G+L EE+YM LPPG C + + I+ K+
Sbjct: 190 LHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLK 249
Query: 419 -------FGYHQSNSDHTLFTKRHKGKLTALTVYVDDMVVTGDDPEERKALQNHLSKEFE 471
FG+ QS+SDHT F K + VYVDD+++ ++ L++ L F+
Sbjct: 250 FSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFK 309
Query: 472 MKDLGPLKYFLGIEVSRSSNGIFLSQRKYTLDLLHEVGMSACEPIDTPVEEGLKLSVEPN 531
++DLGPLKYFLG+E++RS+ GI + QRKY LDLL E G+ C+P P++ + S
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369
Query: 532 QIPVDKGRYQRRVGRLMYLVHTRPDLAYALSIVSQFMHNPGEKHMNAVLRILRYLKAAPG 591
VD Y+R +GRLMYL TR D+++A++ +SQF P H AV++IL Y+K G
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVG 429
Query: 592 KGILFTKNTRCRTIDVYTDADWAGEVNGRRSTAGYFTFVGGNLVTWRSKKQNVVARSSAE 651
+G+ ++ + + V++DA + + RRST GY F+G +L++W+SKKQ VV++SSAE
Sbjct: 430 QGLFYSSQAEMQ-LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 488
Query: 652 SEFRGVADGICEALWLRLLLDDLGYPSERPIQLYCDNKAACDIAHNPVQHDRTKHVEVDR 711
+E+R ++ E +WL +L P +P L+CDN AA IA N V H+RTKH+E D
Sbjct: 489 AEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDC 548
Query: 712 CFIKEK 717
++E+
Sbjct: 549 HSVRER 554
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 405 bits (1040), Expect = e-127, Method: Compositional matrix adjust.
Identities = 209/546 (38%), Positives = 325/546 (59%), Gaps = 44/546 (8%)
Query: 207 PNQSVVEDVPEAPSEPPRKILPSRQTRGIPKPTYEPE-----LSSRVKYPMSQYVSDHRL 261
P+ ++ DVPE P R+TR KP Y + ++S + +SQ++S ++
Sbjct: 18 PSANIQNDVPE-----PSVHTSHRRTR---KPAYLQDYYCHSVASLTIHDISQFLSYEKV 69
Query: 262 SESNKSFVNQLSTVYIPNNVQEALSDSKWKAAMNEEMKSLQKNDTWELVDRPEDKNPVGC 321
S SF+ ++ P+ EA W AM++E+ +++ TWE+ P +K P+GC
Sbjct: 70 SPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGC 129
Query: 322 RWIYSVKYKADGTIERHKARLVAKGYTQTYGVDYTETFAPVAKINTVRVLLSLAANLDWP 381
+W+Y +KY +DGTIER+KARLVAKGYTQ G+D+ ETF+PV K+ +V+++L+++A ++
Sbjct: 130 KWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFT 189
Query: 382 LQQFDVKNAFLHGELLEEVYMDLPPG--------------CKIPQ-IHSQKE-------- 418
L Q D+ NAFL+G+L EE+YM LPPG C + + I+ K+
Sbjct: 190 LHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLK 249
Query: 419 -------FGYHQSNSDHTLFTKRHKGKLTALTVYVDDMVVTGDDPEERKALQNHLSKEFE 471
FG+ QS+SDHT F K + VYVDD+++ ++ L++ L F+
Sbjct: 250 FSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFK 309
Query: 472 MKDLGPLKYFLGIEVSRSSNGIFLSQRKYTLDLLHEVGMSACEPIDTPVEEGLKLSVEPN 531
++DLGPLKYFLG+E++RS+ GI + QRKY LDLL E G+ C+P P++ + S
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369
Query: 532 QIPVDKGRYQRRVGRLMYLVHTRPDLAYALSIVSQFMHNPGEKHMNAVLRILRYLKAAPG 591
VD Y+R +GRLMYL TR D+++A++ +SQF P H AV++IL Y+K G
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVG 429
Query: 592 KGILFTKNTRCRTIDVYTDADWAGEVNGRRSTAGYFTFVGGNLVTWRSKKQNVVARSSAE 651
+G+ ++ + + V++DA + + RRST GY F+G +L++W+SKKQ VV++SSAE
Sbjct: 430 QGLFYSSQAEMQ-LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 488
Query: 652 SEFRGVADGICEALWLRLLLDDLGYPSERPIQLYCDNKAACDIAHNPVQHDRTKHVEVDR 711
+E+R ++ E +WL +L P +P L+CDN AA IA N V H+RTKH+E D
Sbjct: 489 AEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDC 548
Query: 712 CFIKEK 717
++E+
Sbjct: 549 HSVRER 554
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 188 bits (478), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 136/225 (60%), Gaps = 2/225 (0%)
Query: 442 LTVYVDDMVVTGDDPEERKALQNHLSKEFEMKDLGPLKYFLGIEVSRSSNGIFLSQRKYT 501
L +YVDD+++TG L LS F MKDLGP+ YFLGI++ +G+FLSQ KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 502 LDLLHEVGMSACEPIDTPVEEGLKLSVEPNQIPVDKGRYQRRVGRLMYLVHTRPDLAYAL 561
+L+ GM C+P+ TP+ L SV + P D ++ VG L YL TRPD++YA+
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 562 SIVSQFMHNPGEKHMNAVLRILRYLKAAPGKGILFTKNTRCRTIDVYTDADWAGEVNGRR 621
+IV Q MH P + + R+LRY+K G+ KN++ + + D+DWAG + RR
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN-VQAFCDSDWAGCTSTRR 180
Query: 622 STAGYFTFVGGNLVTWRSKKQNVVARSSAESEFRGVADGICEALW 666
ST G+ TF+G N+++W +K+Q V+RSS E+E+R +A E W
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 103 bits (257), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 69/102 (67%)
Query: 278 PNNVQEALSDSKWKAAMNEEMKSLQKNDTWELVDRPEDKNPVGCRWIYSVKYKADGTIER 337
P +V AL D W AM EE+ +L +N TW LV P ++N +GC+W++ K +DGT++R
Sbjct: 28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87
Query: 338 HKARLVAKGYTQTYGVDYTETFAPVAKINTVRVLLSLAANLD 379
KARLVAKG+ Q G+ + ET++PV + T+R +L++A L+
Sbjct: 88 LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLE 129
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 63.2 bits (152), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 548 MYLVHTRPDLAYALSIVSQFMHNPGEKHMNAVLRILRYLKAAPGKGILFTKNTRCRTIDV 607
MYL TRPDL +A++ +SQF M AV ++L Y+K G+G+ ++ + + +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQ-LKA 59
Query: 608 YTDADWAGEVNGRRSTAGYFTFV 630
+ D+DWA + RRS G+ + V
Sbjct: 60 FADSDWASCPDTRRSVTGFCSLV 82