BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1840.1
(182 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00750.1 | GAG/POL/ENV polyprotein | ChrM:220830-221189 FORWA... 75 9e-18
>ATMG00750.1 | GAG/POL/ENV polyprotein | ChrM:220830-221189 FORWARD
LENGTH=119 | 201606
Length = 119
Score = 75.5 bits (184), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 94 KKTAAIILQCAFYWPSIFKDTHAYCLACEGCQKLGSISRRNMMPLNPILVVEVFDVWGID 153
K+ +LQ FYWP+ FKD H + +C+ CQ+ G+ ++RN MP + IL VEVFDVWGI
Sbjct: 29 KQWPRFVLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIY 88
Query: 154 FM 155
FM
Sbjct: 89 FM 90