BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0550.1
(169 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAD15380.1 putative retroelement pol polyprotein [Arabidopsis th... 96 6e-20
KYP47392.1 Retrovirus-related Pol polyprotein from transposon TN... 88 2e-17
CAN71647.1 hypothetical protein VITISV_015503 [Vitis vinifera] 82 2e-16
>AAD15380.1 putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 557
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 54/217 (24%)
Query: 3 MRTKLPVTASGPAFLHVTALIRLCPTMNNQYSPFQYVQGQQPNISRLL------------ 50
M++KLP++A G A LHV +LIR+ PT N+++SP Q V + + +++
Sbjct: 155 MKSKLPISAWGHAILHVASLIRIRPTSNHKFSPSQLVLECELEVQKIIHLQSLANQLPDA 214
Query: 51 ---PRKR-KNQLQASNA---------SEETTNQQATALA----------------NTLLE 81
P+ K+ + A+NA +T N+ T L +
Sbjct: 215 FIDPKSVIKSHIPAANAPIRINILEGQNQTVNESKTCLKRGRPIGSKDKNPRKRKGAKIG 274
Query: 82 VG---------EAPEEAEALEKYELS--PIEEISINYAYNGEVWNRDNIIINDIFALSVA 130
+G E+PEE+ + E+ EEISI Y +G WN+ I I+DIFA +VA
Sbjct: 275 IGKTEDIITNEESPEESLDMTHKEIQVPDNEEISITYVMSGIKWNQKQIDIHDIFACNVA 334
Query: 131 TDIITENDDYEPHSIEECRKMTYWVKWKEAILNEFTF 167
D++ E D+EP SIEEC +++ W KW EAI E F
Sbjct: 335 VDVMDE--DHEPTSIEECTQISDWPKWNEAIDAELKF 369
>KYP47392.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 814
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 44/202 (21%)
Query: 1 MLMRTKLPVTASGPAFLHVTALIRLCPTMNNQYSPFQYVQGQQPNIS------------- 47
+LMR+KLP++ G A LH LIR+ PT +++SP Q V G+QPNIS
Sbjct: 97 LLMRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPI 156
Query: 48 ------RLLPRKRKNQLQASNA-----------SEETTNQQATALANTLLEVGEAPEEAE 90
++ P++R + + T + A N L+ E+ +
Sbjct: 157 APPQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLGGEQKQ 216
Query: 91 ALEKYELSPIEEISI-----------NYAYNGEVWNRDNIIINDIFALSVATDIITENDD 139
LEK ++ P EE + NY NG WNR+N+ I+D+FA ++A + I + +D
Sbjct: 217 -LEK-DIIP-EETQVPEIIENEEISINYVMNGIRWNRNNVNIDDVFAYNIALNEINDIED 273
Query: 140 YEPHSIEECRKMTYWVKWKEAI 161
EP SI +CR+ W KWK+AI
Sbjct: 274 QEPKSINDCRQRNDWPKWKDAI 295
>CAN71647.1 hypothetical protein VITISV_015503 [Vitis vinifera]
Length = 211
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 6/78 (7%)
Query: 84 EAPEEAEALEKYELSPIEEISINYAYNGEVWNRDNIIINDIFALSVATDIITENDDYEPH 143
E PEEA+ E E IS++Y + GE W+R+NI+IN+IFA VA+++I ++D EP
Sbjct: 138 EVPEEAQIPENCE------ISVSYVHTGEKWDRNNIVINNIFAFQVASEVIRNDEDLEPR 191
Query: 144 SIEECRKMTYWVKWKEAI 161
++EECR W KWKEAI
Sbjct: 192 NVEECRHRNDWPKWKEAI 209