BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000016.1_g0060.1
(226 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_002279657.2 PREDICTED: 50S ribosomal protein L6, chloroplasti... 382 e-133
JAT41622.1 50S ribosomal protein L6, chloroplastic, partial [Ant... 380 e-131
XP_010907839.1 PREDICTED: 50S ribosomal protein L6, chloroplasti... 375 e-130
>XP_002279657.2 PREDICTED: 50S ribosomal protein L6, chloroplastic [Vitis vinifera]
CBI28941.3 unnamed protein product, partial [Vitis
vinifera]
Length = 226
Score = 382 bits (982), Expect = e-133, Method: Compositional matrix adjust.
Identities = 187/226 (82%), Positives = 203/226 (89%)
Query: 1 MASSVTTSFSSCNLRSGFFGELSEMRVASVPVSRVGFLRKGIECKESRIGKNPIEVPSNV 60
MASS+T SF + NLRS F GE + + V+SVPV+RVGFLRK IECKESRIGK PIEVPSNV
Sbjct: 1 MASSITPSFQTSNLRSAFLGERNGIYVSSVPVTRVGFLRKTIECKESRIGKKPIEVPSNV 60
Query: 61 TILLEGQDLKVKGPLGELSRTYPREVKVEKVESGQLRVSKAMDTRRANQMHGLFRTLTDN 120
TI LEGQDLKVKGPLGELSRTYPREVKV+K ESG L V KA +TRRANQMHGLFRTLTDN
Sbjct: 61 TITLEGQDLKVKGPLGELSRTYPREVKVQKDESGILTVKKAFETRRANQMHGLFRTLTDN 120
Query: 121 MVVGVSKGFEKKLQLIGVGYRAMLENKDLVLNLGFSHPVKMEIPDGIQVKVEENTRITVS 180
MVVGVSKGFEK+LQL+GVGYRA +E KDLVLNLGFSHPV+M IP ++VKVE+NTRI VS
Sbjct: 121 MVVGVSKGFEKRLQLVGVGYRATVEGKDLVLNLGFSHPVRMPIPGDLKVKVEDNTRIIVS 180
Query: 181 GYDKCAIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 226
GYDKC IGQFAAS+RKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 GYDKCNIGQFAASVRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 226
>JAT41622.1 50S ribosomal protein L6, chloroplastic, partial [Anthurium
amnicola]
Length = 290
Score = 380 bits (975), Expect = e-131, Method: Compositional matrix adjust.
Identities = 179/224 (79%), Positives = 201/224 (89%)
Query: 3 SSVTTSFSSCNLRSGFFGELSEMRVASVPVSRVGFLRKGIECKESRIGKNPIEVPSNVTI 62
+SV+ S SCNL+S F GE S +R + P SR+GFL K +ECKESRIGK PIEVPSNVTI
Sbjct: 67 ASVSPSIPSCNLKSAFLGERSGIRSTAAPASRIGFLAKPVECKESRIGKKPIEVPSNVTI 126
Query: 63 LLEGQDLKVKGPLGELSRTYPREVKVEKVESGQLRVSKAMDTRRANQMHGLFRTLTDNMV 122
LEGQ LKVKGPLGELSRTYPREVK+ K +SGQL+V K +DTRRANQMHGLFRTLTDNMV
Sbjct: 127 TLEGQGLKVKGPLGELSRTYPREVKLVKEDSGQLKVMKTLDTRRANQMHGLFRTLTDNMV 186
Query: 123 VGVSKGFEKKLQLIGVGYRAMLENKDLVLNLGFSHPVKMEIPDGIQVKVEENTRITVSGY 182
+GVSKGFEK+LQL+GVGYRA+LE +DLVLNLGFSHPV+M IPDG+QVKVE+NTRI VSGY
Sbjct: 187 LGVSKGFEKRLQLVGVGYRAILEGRDLVLNLGFSHPVRMTIPDGLQVKVEDNTRIAVSGY 246
Query: 183 DKCAIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 226
DKCAIG+FAAS+RKWRPPEPYKGKG+KYADEIVRRKEGKAGKKK
Sbjct: 247 DKCAIGEFAASVRKWRPPEPYKGKGIKYADEIVRRKEGKAGKKK 290
>XP_010907839.1 PREDICTED: 50S ribosomal protein L6, chloroplastic [Elaeis
guineensis]
Length = 247
Score = 375 bits (962), Expect = e-130, Method: Compositional matrix adjust.
Identities = 176/224 (78%), Positives = 202/224 (90%)
Query: 3 SSVTTSFSSCNLRSGFFGELSEMRVASVPVSRVGFLRKGIECKESRIGKNPIEVPSNVTI 62
+S+ +S SCNL+S F GE E+ + + P+SR+GFLRK ++CKESRIGK PIEVP NVTI
Sbjct: 24 ASLLSSIHSCNLKSLFLGERKEICITNSPISRIGFLRKPVQCKESRIGKRPIEVPPNVTI 83
Query: 63 LLEGQDLKVKGPLGELSRTYPREVKVEKVESGQLRVSKAMDTRRANQMHGLFRTLTDNMV 122
L+GQDLKVKGPLGELS TYPREVK+E +ESG LRV KA DTRRANQMHGLFRTLTDNMV
Sbjct: 84 ALDGQDLKVKGPLGELSTTYPREVKIEILESGTLRVFKASDTRRANQMHGLFRTLTDNMV 143
Query: 123 VGVSKGFEKKLQLIGVGYRAMLENKDLVLNLGFSHPVKMEIPDGIQVKVEENTRITVSGY 182
VGVSKGFEK+LQL+GVGYRAMLE +DLVLNLGFSHP++M IP+G+QVKVE+NTRI VSGY
Sbjct: 144 VGVSKGFEKRLQLVGVGYRAMLEGRDLVLNLGFSHPIRMTIPEGLQVKVEDNTRIAVSGY 203
Query: 183 DKCAIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 226
DKCAIG+FAA+IRKWRPPEPYKGKGV+YADE+VRRKEGKAGKKK
Sbjct: 204 DKCAIGEFAAAIRKWRPPEPYKGKGVRYADEVVRRKEGKAGKKK 247