BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000029.1_g0010.1
(223 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_013650925.1 PREDICTED: uncharacterized protein LOC106355549 [... 167 4e-44
XP_009140270.1 PREDICTED: putative ribonuclease H protein At1g65... 166 9e-44
XP_009115910.1 PREDICTED: putative ribonuclease H protein At1g65... 165 2e-43
>XP_013650925.1 PREDICTED: uncharacterized protein LOC106355549 [Brassica napus]
Length = 1726
Score = 167 bits (423), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 60 EVQNAFVPGRQISDNIIVAREIFHSM-ANTSAADGYFVLKADMAKAYDRVDWKFLHDVLT 118
E QNAF+PGR ISDNI+VA EIFHS+ A A+ Y +K D+ KAYDR++W+FL + +
Sbjct: 540 ENQNAFIPGRLISDNIVVAHEIFHSLKARKRQANSYMAVKTDITKAYDRLEWRFLQETMR 599
Query: 119 RYGIITKSLLPIMNFVTTSSFSILLNGIPKGFFYSERGLRQGCPLSPYLFILCSETLTKL 178
G K + IM ++T ++S+L+NG P+GF +RGLRQG PLSPYLFILC+E L+ L
Sbjct: 600 YMGFGEKWIGWIMACISTVTYSVLINGAPEGFITPKRGLRQGDPLSPYLFILCAEVLSHL 659
Query: 179 VVQAETDGLYCGLKLNRYAPSVNHLMFADDLFFF 212
+A D G+K+ AP+VNHL+FADD FF
Sbjct: 660 CNKAMRDRSLLGVKIAIQAPAVNHLLFADDSLFF 693
>XP_009140270.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 866
Score = 166 bits (419), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
Query: 60 EVQNAFVPGRQISDNIIVAREIFHSM-ANTSAADGYFVLKADMAKAYDRVDWKFLHDVLT 118
E Q AFVPGR ISDN I+A E++HS+ + Y LK D+ KAYDR++W FL + +
Sbjct: 35 ENQTAFVPGRVISDNTIIAHEVYHSLKVRKRQSKSYMALKTDITKAYDRLEWSFLEETMR 94
Query: 119 RYGIITKSLLPIMNFVTTSSFSILLNGIPKGFFYSERGLRQGCPLSPYLFILCSETLTKL 178
R G K + IM V++ SFSIL+NG PKG+ ERG+RQG PLSPYLFILC+E L+ +
Sbjct: 95 RMGFCEKWISWIMICVSSVSFSILINGSPKGYIKPERGIRQGDPLSPYLFILCAEVLSHM 154
Query: 179 VVQAETDGLYCGLKLNRYAPSVNHLMFADDLFFF 212
+ +A G+K++ ++PSVNHL+FADD FF
Sbjct: 155 MTRAAMKRKIQGIKISTHSPSVNHLLFADDSLFF 188
>XP_009115910.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 869
Score = 165 bits (417), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 60 EVQNAFVPGRQISDNIIVAREIFHSM-ANTSAADGYFVLKADMAKAYDRVDWKFLHDVLT 118
E Q AF+PGR I+DNIIVA E+FHS+ A Y +K D+AKAYDR++W+FL + +
Sbjct: 35 ENQQAFIPGRIITDNIIVAHEVFHSLKVRKRQASSYMAVKTDIAKAYDRLEWRFLEETMI 94
Query: 119 RYGIITKSLLPIMNFVTTSSFSILLNGIPKGFFYSERGLRQGCPLSPYLFILCSETLTKL 178
R G T+ + IM V++ SFS+L+NG P+G ERG+RQG PLSPY+FILC+E L+ +
Sbjct: 95 RMGFDTRWIKWIMACVSSVSFSVLINGAPEGHIVPERGIRQGDPLSPYIFILCAEVLSHM 154
Query: 179 VVQAETDGLYCGLKLNRYAPSVNHLMFADDLFFF 212
+ +A D G+K+ AP VNHL+FADD FF
Sbjct: 155 MNRAMEDRSILGVKVALQAPPVNHLLFADDSLFF 188