BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0050.1
(305 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 231 3e-65
XP_017609417.1 PREDICTED: uncharacterized protein LOC108455356 [... 211 8e-64
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 224 2e-63
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 231 bits (590), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 182/303 (60%), Gaps = 23/303 (7%)
Query: 6 FNFRSLLDKEKLNEHNFLDWESNLGIVLRMEGKQHVLETPIPVLDDDSTKEEIDEERSVR 65
F RS+L KEKLN NF DW NL IVLR + K+HVLE PIP + D+ + +S
Sbjct: 96 FALRSILKKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPADNAAATL---KSAY 152
Query: 66 KKA----EPVTCLMLATMEPTVQEQFIDMDAYSMMRQLRQMFQKQSRLERFETSKAIMDM 121
KKA V+CLMLA M +Q+QF +++AY M+ L+ MF+ Q+R +RFE SK +
Sbjct: 153 KKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTKRFEISKNLFSC 212
Query: 122 RLEKGKPVGPHVRQMIRLMGKLAKLGFLYSQQTATDIILHSLHSGFNQFKMNYNMNGWDK 181
+L +G PV PH+ +M+ L KLGF SQ+ ATD+IL SL + + QF +N++MNG DK
Sbjct: 213 KLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMNGLDK 272
Query: 182 TLEELHSMLLTAEKDVAIVETKKDVLMVQKDKGFKKGGKQKKKTASKGKGKRVA------ 235
L ELH +L TAE + + + V+MVQK FKK K +T KGKGK+V
Sbjct: 273 NLTELHMLLKTAEDSIKKINSH--VMMVQKSTSFKK----KARTWVKGKGKKVLDGIQTN 326
Query: 236 KPKDK---GPPPDTKCFYCDGKGHWKRNCPKFLED-KKNGTVQLGTEYLAKEDEIQEEAE 291
KPK K GP + +CFYC GHWKRNC K+L D KKNG + T + D + ++
Sbjct: 327 KPKLKTKSGPTQENECFYCKEPGHWKRNCKKYLADLKKNGGTKPSTSGINVIDVLLADSS 386
Query: 292 AST 294
++
Sbjct: 387 VNS 389
>XP_017609417.1 PREDICTED: uncharacterized protein LOC108455356 [Gossypium
arboreum]
Length = 289
Score = 211 bits (538), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 171/286 (59%), Gaps = 17/286 (5%)
Query: 4 DIFNFRSLLDKEKLNEHNFLDWESNLGIVLRMEGKQHVLETPIPVLDDDSTKEEIDEERS 63
+ + RS+L+ +KLN NFLDW NL IVL+ E K +V E P+P ++ +R
Sbjct: 6 NTLSLRSVLENDKLNGLNFLDWFRNLRIVLKQERKLYVNEQPLP---NEPPANASRADRD 62
Query: 64 VRKK----AEPVTCLMLATMEPTVQEQFIDMDAYSMMRQLRQMFQKQSRLERFETSKAIM 119
V KK V CLMLATM P +Q+Q DM AY M+ L++++Q Q+R +RF+ SKA+
Sbjct: 63 VYKKHLNDMVDVRCLMLATMNPELQKQHEDMVAYDMIDHLKELYQGQARQKRFDISKALF 122
Query: 120 DMRLEKGKPVGPHVRQMIRLMGKLAKLGFLYSQQTATDIILHSLHSGFNQFKMNYNMNGW 179
++ +G PVGPHV +MIR + L KLGF SQ+ ATD+IL SL ++QF +N+NMN
Sbjct: 123 QCKMAEGSPVGPHVLKMIRYIESLFKLGFPLSQELATDVILQSLPDSYSQFVLNFNMNEI 182
Query: 180 DKTLEELHSMLLTAEKDVAIVETKKDVLMVQKDKGFKKGGKQKKKTA----SKGKGKRVA 235
DKTL +L SML T E ++ V K +LMV+ +KG K QKK + GKGK
Sbjct: 183 DKTLPQLLSMLRTVEGNMKRVRP-KPILMVRNNKGKGKAKVQKKPKGKGRPNSGKGKAAL 241
Query: 236 KPKDKGPPPDTKCFYCDGKGHWKRNCPKFLED----KKNGTVQLGT 277
KPK G + CF+ GHWKRN P +LE+ K +GT GT
Sbjct: 242 KPKS-GVSKEGNCFHYGVTGHWKRNYPVYLEEIKKAKASGTSASGT 286
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 224 bits (570), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/291 (46%), Positives = 173/291 (59%), Gaps = 18/291 (6%)
Query: 6 FNFRSLLDKEKLNEHNFLDWESNLGIVLRMEGKQHVLETPIPVLDDDSTKEEIDEERSVR 65
F RS+L+KEKLN NF DW NL IVLR + K+HVLE PIP D T+ ++
Sbjct: 13 FALRSILEKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIP---DVPTENAAAAIKTAY 69
Query: 66 KKA----EPVTCLMLATMEPTVQEQFIDMDAYSMMRQLRQMFQKQSRLERFETSKAIMDM 121
KKA V+CLMLA M +Q+QF +++AY M+ L+ MF+ Q+R ERFE SK +
Sbjct: 70 KKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTERFEISKNLFGC 129
Query: 122 RLEKGKPVGPHVRQMIRLMGKLAKLGFLYSQQTATDIILHSLHSGFNQFKMNYNMNGWDK 181
+L +G PV PHV +M+ L KLGF SQ+ ATD+IL SL + QF +N++MNG DK
Sbjct: 130 KLAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDLILASLPESYGQFILNFHMNGLDK 189
Query: 182 TLEELHSMLLTAEKDVAIVETKKDVLMVQKDKGFKKGGKQKKKTASKGKGK---RVAKPK 238
L ELH ML TAE V + V+MVQK FKK K K K K + KPK
Sbjct: 190 NLTELHMMLKTAEGSVK--KCNNHVIMVQKSTSFKKKAKTWIKKKGKAKVSDKIQTDKPK 247
Query: 239 DK---GPPPDTKCFYCDGKGHWKRNCPKFLED-KKNGTVQLGT--EYLAKE 283
K GP + +CFYC GHWKRNC K+L D K+NG + T E+L+ E
Sbjct: 248 TKTKSGPTQENECFYCKELGHWKRNCKKYLADQKRNGGTKTSTTGEFLSLE 298