BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0330.1
(128 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN61272.1 hypothetical protein VITISV_039063 [Vitis vinifera] 196 1e-55
AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-clas... 192 1e-54
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 192 1e-54
>CAN61272.1 hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 196 bits (497), Expect = 1e-55, Method: Composition-based stats.
Identities = 85/128 (66%), Positives = 101/128 (78%)
Query: 1 MEFCGNEFNRLCVDEGMVRHHTVRKTPQQNGVAERMNRTLLEQARCMLSNAGLPEVFWVQ 60
+EFC +F+ C EG+VRH TVR TPQQNGVAERMN+TL+++ARCM +AGL + FW +
Sbjct: 876 LEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAE 935
Query: 61 AVNTTAYLVNISPCTSIECKTPNEVWSGYPGNYENLRIFGCSAYAHVKEGKLDPRAKKCI 120
AVNT AYLVN SP T+I+ KTP EVWSG P NY L+IFGC AYAHV +GKL+PRA KCI
Sbjct: 936 AVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCI 995
Query: 121 FLGYEPGV 128
FLGY GV
Sbjct: 996 FLGYATGV 1003
>AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA91548.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 192 bits (488), Expect = 1e-54, Method: Composition-based stats.
Identities = 84/128 (65%), Positives = 100/128 (78%)
Query: 1 MEFCGNEFNRLCVDEGMVRHHTVRKTPQQNGVAERMNRTLLEQARCMLSNAGLPEVFWVQ 60
MEFC F C EG+VRH+TV TPQQNGVAERMNRT++ +ARC+LSNAGLP+ FW +
Sbjct: 771 MEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAE 830
Query: 61 AVNTTAYLVNISPCTSIECKTPNEVWSGYPGNYENLRIFGCSAYAHVKEGKLDPRAKKCI 120
AV+T YL+N SP +I+ KTP EVWSG P NY +LR+FGC+AYAHV GKL+PRA KCI
Sbjct: 831 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCI 890
Query: 121 FLGYEPGV 128
FLGY GV
Sbjct: 891 FLGYPSGV 898
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 192 bits (488), Expect = 1e-54, Method: Composition-based stats.
Identities = 83/128 (64%), Positives = 101/128 (78%)
Query: 1 MEFCGNEFNRLCVDEGMVRHHTVRKTPQQNGVAERMNRTLLEQARCMLSNAGLPEVFWVQ 60
+EFC +EF++ C DEG+ RH TVR TPQQNGVAERMN+TLLE+ARCMLSNAGL FW +
Sbjct: 542 LEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAE 601
Query: 61 AVNTTAYLVNISPCTSIECKTPNEVWSGYPGNYENLRIFGCSAYAHVKEGKLDPRAKKCI 120
AV+T YL+N P T I+CKTP E+WSG +Y NL+ FGC+AY HV EGKL+PRAKK +
Sbjct: 602 AVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGV 661
Query: 121 FLGYEPGV 128
F+GY GV
Sbjct: 662 FVGYGDGV 669