BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0350.1
(155 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 191 9e-56
ABG22123.1 polyprotein, partial [Prunus avium] 184 1e-55
KYP42039.1 Retrovirus-related Pol polyprotein from transposon TN... 187 2e-55
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 191 bits (484), Expect = 9e-56, Method: Composition-based stats.
Identities = 84/132 (63%), Positives = 105/132 (79%)
Query: 1 MVCTRPNILHVVSVVSRYMGRPGKGHWQAVKWILRYLGGTAELGLVYDRRADTSGSVVGF 60
MVCTRP++ + VS+VSRYM PGK HW AVKWI RYL GT+ +GLV+DR T+ +V GF
Sbjct: 294 MVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGF 353
Query: 61 VDSDFSGDLDRKRSLTGYSFTLYGSAISWRAVLQSVVALSTTEVEYMAAIEAVKEAIWLS 120
VDSD+ GDLDR+RSL+GY FTL SAISW+A LQS+ ALSTTE EY++A E VKEA+W+
Sbjct: 354 VDSDYGGDLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIR 413
Query: 121 GLFRDFGLEQEV 132
GL ++ GL Q+V
Sbjct: 414 GLVKELGLTQDV 425
>ABG22123.1 polyprotein, partial [Prunus avium]
Length = 276
Score = 184 bits (467), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 104/131 (79%)
Query: 1 MVCTRPNILHVVSVVSRYMGRPGKGHWQAVKWILRYLGGTAELGLVYDRRADTSGSVVGF 60
MVCTRP+I VS+VSRYM PGKGHWQAVKWILRY+ GT ++GL++ + + VVG+
Sbjct: 116 MVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCVVGY 175
Query: 61 VDSDFSGDLDRKRSLTGYSFTLYGSAISWRAVLQSVVALSTTEVEYMAAIEAVKEAIWLS 120
VDSD++GDLD++RS TG+ FT+ G +SWR++LQS VALSTTE EYMA EA+KEAIWL
Sbjct: 176 VDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQ 235
Query: 121 GLFRDFGLEQE 131
GL D G++Q+
Sbjct: 236 GLLDDLGVQQD 246
>KYP42039.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 394
Score = 187 bits (475), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 105/132 (79%)
Query: 1 MVCTRPNILHVVSVVSRYMGRPGKGHWQAVKWILRYLGGTAELGLVYDRRADTSGSVVGF 60
MVCTRP++ + VS+VSRYM PGK HW AVKWI RYL GT+ +GLV+DR T+ +V GF
Sbjct: 185 MVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGF 244
Query: 61 VDSDFSGDLDRKRSLTGYSFTLYGSAISWRAVLQSVVALSTTEVEYMAAIEAVKEAIWLS 120
VDSD+ GDLDR+RSL+GY FTL SAISW+A LQS+ ALSTTE EY++A E VKEA+W+
Sbjct: 245 VDSDYGGDLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIR 304
Query: 121 GLFRDFGLEQEV 132
GL ++ GL Q+V
Sbjct: 305 GLVKELGLTQDV 316