BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0430.1
(132 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC12735.1 putative retrovirus-related polyprotein, partial [Lit... 157 6e-46
KYP48029.1 Retrovirus-related Pol polyprotein from transposon TN... 142 4e-37
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN... 142 5e-37
>AAC12735.1 putative retrovirus-related polyprotein, partial [Lithospermum
erythrorhizon]
Length = 244
Score = 157 bits (398), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 90/103 (87%)
Query: 26 EFCEHSVFGKAHRVTFSTSKHKTKEVLDYVHTDVWGSAKLDSKGGSRYFVTFVDDHSRFV 85
EFCEH V+GK HR+ F TSKHK++ +LDYVHTD+WG AK++SK GS YFVTFVDD+SR+
Sbjct: 141 EFCEHWVYGKTHRLKFFTSKHKSRGLLDYVHTDLWGPAKVNSKDGSWYFVTFVDDYSRYA 200
Query: 86 WLYFLKYKNEVFNTFLVWKAMVKNKTGRKLKTLRSDNGTEYTD 128
W+YFLK+KNEVF+ F W+AMV+N+TGRKLKT+RSDNG EYT+
Sbjct: 201 WIYFLKHKNEVFDIFKQWRAMVENRTGRKLKTVRSDNGKEYTE 243
>KYP48029.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 634
Score = 142 bits (357), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 22 EPLHEFCEHSVFGKAHRVTFSTSKHKTKEVLDYVHTDVWGSAKLDSKGGSRYFVTFVDDH 81
EPL EFCEH V GKA R+ FSTS H + VLDYVH+D+WG ++ +S GG+RYF++ VDD
Sbjct: 109 EPL-EFCEHCVMGKASRLKFSTSTHSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDF 167
Query: 82 SRFVWLYFLKYKNEVFNTFLVWKAMVKNKTGRKLKTLRSDNGTEYTDGAF 131
SR VW+YFLK KNEVF+ F WK +V+ +TGR LK LR+DNG E+ D F
Sbjct: 168 SRKVWVYFLKQKNEVFDRFKEWKVLVETQTGRNLKKLRTDNGLEFCDEKF 217
>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 142 bits (358), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 82/106 (77%)
Query: 26 EFCEHSVFGKAHRVTFSTSKHKTKEVLDYVHTDVWGSAKLDSKGGSRYFVTFVDDHSRFV 85
EFCEH VFGK RV+FST+ H+TK LDY+H+D+WG +K+ S GG RY +T +DD SR V
Sbjct: 451 EFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKV 510
Query: 86 WLYFLKYKNEVFNTFLVWKAMVKNKTGRKLKTLRSDNGTEYTDGAF 131
W+YFL++KNE F TF WK +V+ +TG+K+K LR+DNG E+ +G F
Sbjct: 511 WVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDF 556