BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0630.1
(586 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 561 0.0
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 552 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 540 e-179
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 561 bits (1446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 278/488 (56%), Positives = 341/488 (69%), Gaps = 42/488 (8%)
Query: 46 GAYVIEVNLADMADSPSWVFDTGCGAHIISKLDELKEVRYLTKSEMVLRVANKARVAAVA 105
G VI++NLA + + SWVFDTG AH L ++ R L + E+ LRV N A VA VA
Sbjct: 286 GINVIDINLA-TSPTDSWVFDTGSVAHSCKSLQGMRRSRGLRRGEVNLRVGNGASVATVA 344
Query: 106 VGTFELSLETGLILVLHNCYYVPTISRNIISVSVLDKEGYHAIIKDKCCSLYKGEMFYTS 165
VGT L L +GL+L L+NCY VPT+ +N+IS S L EGY + CS+Y +MFY
Sbjct: 345 VGTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFH 404
Query: 166 AKLRNGLYVVNIE-DEILNIDTKRLRTHDSNQSYLWHCRLGHINMKRMQKLHSDGLLGSC 224
A L NGLYV+N+E I NI+T+R ++D N +++WHCRLGHIN KRM+KLH DGLL S
Sbjct: 405 APLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSF 464
Query: 225 DLESYDTCEPCLVGKMTRSSFKGKGDRVSELLGLIHTDVCGPMSTLARGNYGYFITFTDD 284
D ES++TCE CL+GKMT++ F G +R S+LL L+HTDVCGPMS+ ARG Y YFITFTDD
Sbjct: 465 DFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDD 524
Query: 285 FTRYGYVYLMKHKSESFEVFKQFQNEVENQLGKKIKAIRSDQGGEYLSQEFEDHLRSCGI 344
F+RYGY+YLM+HKSESFE FK+FQNEV+N LGK IK +RSD+GGEY+SQEF +HL+ CGI
Sbjct: 525 FSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGI 584
Query: 345 VSQLTPPGTPQMNG---------------------------GYALETAAFTLNRAPSKAV 377
V QLTPPGTPQ NG GYALETAA TLNR PSK+V
Sbjct: 585 VPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVPSKSV 644
Query: 378 EKTPYEIWTGKVPKLSFLKIWGCDVYVKRLQGDKLAPRSNKCLFVGYPKETKGYYFYNPS 437
EKTPYEIWTG+ P LSFLKIWGC+ YVKRLQ DKL P+S+KC VGYPKETKGYYFYN
Sbjct: 645 EKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFVVGYPKETKGYYFYNRE 704
Query: 438 ENKVFVARDDVFLEKEFISKKTSGRNIEIEEVRSEQQTDTVVPMSEVAIPNYSEPIEKER 497
+ KVFVAR VFLEKEF+S++ SG + +EEV+ +T S E ++
Sbjct: 705 QAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETPET-------------VSATTEPQQ 751
Query: 498 EEEMVDPP 505
E++ V PP
Sbjct: 752 EDQSVAPP 759
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 552 bits (1423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 272/462 (58%), Positives = 327/462 (70%), Gaps = 29/462 (6%)
Query: 46 GAYVIEVNLADMADSPSWVFDTGCGAHIISKLDELKEVRYLTKSEMVLRVANKARVAAVA 105
G VIE+NLA + + SWVFDTG AHI L LK R L + E+ +RV N ARVAAVA
Sbjct: 262 GINVIEINLA-TSSTDSWVFDTGSVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVA 320
Query: 106 VGTFELSLETGLILVLHNCYYVPTISRNIISVSVLDKEGYHAIIKDKCCSLYKGEMFYTS 165
VGT LSL + L+L L+N Y +P + +N+IS S L EGY D CS+Y ++FY
Sbjct: 321 VGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAEGYGFRSVDNDCSVYYNDIFYFH 380
Query: 166 AKLRNGLYVVNIED-EILNIDTKRLRTHDSNQSYLWHCRLGHINMKRMQKLHSDGLLGSC 224
A + +GLY+VN+ + NI+ KR R +D N +++WHCRLGHIN KRM+K+H DGLL S
Sbjct: 381 APMMSGLYIVNLNGYSVYNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSF 440
Query: 225 DLESYDTCEPCLVGKMTRSSFKGKGDRVSELLGLIHTDVCGPMSTLARGNYGYFITFTDD 284
D ES++TCE CL+GKMT++ F G+ +R SELL L+HTDVCGPMS+ ARG +GYF TFTDD
Sbjct: 441 DFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDD 500
Query: 285 FTRYGYVYLMKHKSESFEVFKQFQNEVENQLGKKIKAIRSDQGGEYLSQEFEDHLRSCGI 344
F+RYGYVYLM+HKSESFE FK+F NEV+N LGK IK +RSD+GGEYLS EF +HL+ CGI
Sbjct: 501 FSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGI 560
Query: 345 VSQLTPPGTPQMNG---------------------------GYALETAAFTLNRAPSKAV 377
V QLTPPGTPQ NG GYALET AFTLN PSK+V
Sbjct: 561 VPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYALETTAFTLNSVPSKSV 620
Query: 378 EKTPYEIWTGKVPKLSFLKIWGCDVYVKRLQGDKLAPRSNKCLFVGYPKETKGYYFYNPS 437
+KTPYEIWTGK P LSFLKIWGC+VYVKRLQ DKL P+S+KC FVGYPKETKGYYFYN
Sbjct: 621 DKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNQE 680
Query: 438 ENKVFVARDDVFLEKEFISKKTSGRNIEIEEVRSEQQTDTVV 479
E KVFVAR VFLEKEFIS+K G + R + + T V
Sbjct: 681 EGKVFVARHGVFLEKEFISRKDIGSMLWKHRFREDPKKKTDV 722
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 540 bits (1392), Expect = e-179, Method: Compositional matrix adjust.
Identities = 262/421 (62%), Positives = 309/421 (73%), Gaps = 33/421 (7%)
Query: 117 LILVLHNCYYVPTISRNIISVSVLDKEGYHAIIKDKCCSLYKGEMFYTSAKLRNGLYVVN 176
++L L NCYYVP I++NIISVS LD EG+H IK+KCCS + +MFY SA L NGL+V+N
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60
Query: 177 IEDEILNIDTKRLRTHDSNQSYLWHCRLGHINMKRMQKLHSDGLLGSCDLESYDTCEPCL 236
I NI TK+ +++D N ++LWHCRLGHIN K +QKLHSDGLL S D ESY+TCE CL
Sbjct: 61 QSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCL 120
Query: 237 VGKMTRSSFKGKGDRVSELLGLIHTDVCGPMSTLARGNYGYFITFTDDFTRYGYVYLMKH 296
+GKMT++ F G +R S+LLGLIHTDVCGPMST ARGNY YFITFTDDF+RYGYVYLMKH
Sbjct: 121 LGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKH 180
Query: 297 KSESFEVFKQFQNEVENQLGKKIKAIRSDQGGEYLSQEFEDHLRSCGIVSQLTPPGTPQM 356
KS+SFE FK+FQNEV+NQ GK IKA+RSD+GGEYLSQ F DHLR CGIVSQLTPPGTPQ
Sbjct: 181 KSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQW 240
Query: 357 NG---------------------------GYALETAAFTLNRAPSKAVEKTPYEIWTGKV 389
NG GYALET+AF LNR PSK+VEKTPYEIWTGKV
Sbjct: 241 NGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKV 300
Query: 390 PKLSFLKIWGCDVYVKRLQGDKLAPRSNKCLFVGYPKETKGYYFYNPSENKVFVARDDVF 449
P LSFLKIWGC+ Y KRL DKL P+S+KC FVGYPKETKGYYFY+P++NKVFV R+ F
Sbjct: 301 PNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAF 360
Query: 450 LEKEFISKKTSGRNIEIEEVRSEQ------QTDTVVPMSEVAIPNYSEPIEKEREEEMVD 503
LE+EF+SK TSG + +EEVR Q Q + + + V P EP + E +
Sbjct: 361 LEREFLSKGTSGSKVLLEEVREPQGDVPTSQEEHQLDLRRVVEPILVEPEVRRSERSRHE 420
Query: 504 P 504
P
Sbjct: 421 P 421