BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1560.1
(307 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_008377550.1 PREDICTED: uncharacterized protein LOC103440632 [... 383 e-124
KYP39292.1 Retrovirus-related Pol polyprotein from transposon TN... 365 e-121
KYP64439.1 Retrovirus-related Pol polyprotein from transposon TN... 382 e-121
>XP_008377550.1 PREDICTED: uncharacterized protein LOC103440632 [Malus domestica]
Length = 793
Score = 383 bits (983), Expect = e-124, Method: Compositional matrix adjust.
Identities = 181/307 (58%), Positives = 223/307 (72%)
Query: 1 MTYDANILFNPGAPHCSHIDNVNGVSVPVTKSGTVNLTPSLSLEHTLLVPSLSNNLLSVA 60
M YDA++ ++ +P + NG T + +++LTPSLS+ + LLVP+LSN+LLSV
Sbjct: 425 MXYDASLFYHMTSPSKEDVITANGDVXXXTGAXSISLTPSLSIHNXLLVPTLSNHLLSVG 484
Query: 61 QVTEQLNCLVLMYPRFCLLQDLNNKEIFGRGTKRKGLYYVDDVCIKKGLAVTGSSHVKED 120
QV EQL+C+VLM+P FCLLQD+ + I GR TKR+GLYYVDDV V K
Sbjct: 485 QVXEQLDCVVLMFPTFCLLQDIQTRAIIGRXTKRRGLYYVDDVSASHVNQVXSGHXNKNK 544
Query: 121 QIWLWHKRLGHASFGYLQYLFPRLFSGCDISNFNCETCILAKSHRASYYSSKNKTLLPFE 180
IWLWH+RLGHASFGYL+ L P LF G SBF C CILAKSHR SY+SS NK +PFE
Sbjct: 545 TIWLWHRRLGHASFGYLKKLLPSLFHGIXDSBFQCNDCILAKSHRTSYHSSFNKRTIPFE 604
Query: 181 LVHSDVWGPAPVSTISGYRWFLIFVDDCTRMTWLYLIKHKNDVQECFQIFHKMIQTQFST 240
LVHSDVWGP+PV+T G WF+ FVDDCTRMTWLY +KHK+DV + F F+ M++ QFS
Sbjct: 605 LVHSDVWGPSPVATNHGVXWFVXFVDDCTRMTWLYTMKHKSDVGQIFNQFYCMVKNQFSL 664
Query: 241 TVKILRSDNGGEYVNHELRKYFQEHGIIHETTCPHTSQQNGVAEWKNRQLLEVTRASLIG 300
+K+LRSDNGGEY+N EL ++F EHGI+HETTCPHT QQNGVAE KNR +LE TRA LIG
Sbjct: 665 PLKVLRSDNGGEYINTELSQFFXEHGILHETTCPHTPQQNGVAERKNRHILETTRALLIG 724
Query: 301 ASMQPTY 307
A +Y
Sbjct: 725 AHAPHSY 731
>KYP39292.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 487
Score = 365 bits (937), Expect = e-121, Method: Compositional matrix adjust.
Identities = 172/303 (56%), Positives = 225/303 (74%), Gaps = 9/303 (2%)
Query: 5 ANILFNPGAPHCSHIDNVNGVSVPVTKSGTVNLTPSLSLEHTLLVPSLSNNLLSVAQVTE 64
A+I F+P + + P +G+V L+P+L L +TLLVPSLS+ LLSV+QVT+
Sbjct: 39 ASICFSPSS---------SLFPFPFPATGSVMLSPTLLLSNTLLVPSLSHKLLSVSQVTK 89
Query: 65 QLNCLVLMYPRFCLLQDLNNKEIFGRGTKRKGLYYVDDVCIKKGLAVTGSSHVKEDQIWL 124
LNC+VL+YP FCLLQ++ KEI GRGTKR GLYY++D + K + S++K +QI L
Sbjct: 90 DLNCVVLIYPSFCLLQNILTKEIIGRGTKRGGLYYMEDFSVGKAHHMYHPSNIKREQILL 149
Query: 125 WHKRLGHASFGYLQYLFPRLFSGCDISNFNCETCILAKSHRASYYSSKNKTLLPFELVHS 184
WH+RLGH SF YL+++FP LFS + N CETCILAKSHR + S NK+ +PF L+HS
Sbjct: 150 WHRRLGHPSFEYLKHVFPSLFSDTSLLNLKCETCILAKSHRTHFPLSMNKSDVPFALIHS 209
Query: 185 DVWGPAPVSTISGYRWFLIFVDDCTRMTWLYLIKHKNDVQECFQIFHKMIQTQFSTTVKI 244
DVWGP+P S+ G+RWF+ FVDDCTRMTW++++K KN+V + FQ+FH+MIQTQ+S + I
Sbjct: 210 DVWGPSPKSSSLGFRWFVTFVDDCTRMTWVFVLKQKNEVFQTFQVFHQMIQTQYSAKMCI 269
Query: 245 LRSDNGGEYVNHELRKYFQEHGIIHETTCPHTSQQNGVAEWKNRQLLEVTRASLIGASMQ 304
LRSDNGGEYVN + R YFQ+HG+IHETTCP T QQNG+AE KNR +LE TRA L+GA +
Sbjct: 270 LRSDNGGEYVNQQFRNYFQKHGLIHETTCPQTPQQNGIAERKNRHILETTRALLLGAHVP 329
Query: 305 PTY 307
Y
Sbjct: 330 SHY 332
>KYP64439.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1158
Score = 382 bits (982), Expect = e-121, Method: Compositional matrix adjust.
Identities = 179/307 (58%), Positives = 230/307 (74%)
Query: 1 MTYDANILFNPGAPHCSHIDNVNGVSVPVTKSGTVNLTPSLSLEHTLLVPSLSNNLLSVA 60
MT+DA + P + I N NG VT +GTV L+P+L L +TLLVPSLS+ LLSV+
Sbjct: 308 MTFDATDFYERSNPRRTSIANANGGLSSVTGAGTVMLSPTLLLSNTLLVPSLSHKLLSVS 367
Query: 61 QVTEQLNCLVLMYPRFCLLQDLNNKEIFGRGTKRKGLYYVDDVCIKKGLAVTGSSHVKED 120
QVT+ LNC+VL+YP FCLLQ++ KEI GRGTKR GLYY++D + K + S++K +
Sbjct: 368 QVTKDLNCVVLIYPSFCLLQNILTKEIIGRGTKRGGLYYMEDFSVGKAHHMYHPSNIKRE 427
Query: 121 QIWLWHKRLGHASFGYLQYLFPRLFSGCDISNFNCETCILAKSHRASYYSSKNKTLLPFE 180
QI LWH+RLGH SF YL+++FP LFS + N CETCILAKSHR + S NK+ +PF
Sbjct: 428 QILLWHRRLGHPSFEYLKHVFPSLFSDTSLLNLKCETCILAKSHRTHFPLSMNKSDVPFA 487
Query: 181 LVHSDVWGPAPVSTISGYRWFLIFVDDCTRMTWLYLIKHKNDVQECFQIFHKMIQTQFST 240
L+HSDVWGP+P S+ G+RWF+ FVDDCTRMTW++++K KN+V + FQ+FH+MIQTQ+S
Sbjct: 488 LIHSDVWGPSPKSSSLGFRWFVTFVDDCTRMTWVFVLKQKNEVFQTFQVFHQMIQTQYSA 547
Query: 241 TVKILRSDNGGEYVNHELRKYFQEHGIIHETTCPHTSQQNGVAEWKNRQLLEVTRASLIG 300
+ ILRSDNGGEYVN + R YFQ+HG+IHETTCP T QQNG+AE KNR +LE TRA L+G
Sbjct: 548 KMCILRSDNGGEYVNQQFRNYFQKHGLIHETTCPQTPQQNGIAERKNRHILETTRALLLG 607
Query: 301 ASMQPTY 307
A + Y
Sbjct: 608 AHVPSHY 614