BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1810.1
(510 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GAU51472.1 hypothetical protein TSUD_95870 [Trifolium subterraneum] 316 1e-91
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN... 294 2e-88
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 285 3e-81
>GAU51472.1 hypothetical protein TSUD_95870 [Trifolium subterraneum]
Length = 1682
Score = 316 bits (809), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 214/604 (35%), Positives = 295/604 (48%), Gaps = 126/604 (20%)
Query: 28 WMLDSGASHHMCPNRKWFTTYRSIDGGTVIMGNDNTCQTAGLRTIRIKMHDG-------- 79
W++DSG S HMC +++F T +GG V +GN+ + G TIR+KM+D
Sbjct: 253 WVMDSGCSDHMCLRKEYFKTLELKEGGVVRLGNNKAGKVQGTGTIRLKMYDDRDFLLKNV 312
Query: 80 ------VRNDCKIII----------ENDSIKVVKGYLVAMRGTRYGNLYTLSGTIIMGDV 123
RN I + E+ SI++ G LV +G++ LY L G+ ++ +
Sbjct: 313 RYIPELKRNLISISMFDGLGYSTRFEHGSIRISHGALVIAKGSKMNGLYILEGSTVISNA 372
Query: 124 AVGISGRDPTACTRLWHMRLGHMSEKGISLMCGKGLLKDMKKPCMEFCEHCVFGKAHR-- 181
V I + T+LWH+RLGH+SE+G+ + +G L ++FC++C GK H+
Sbjct: 373 LVTIV--EKADMTKLWHLRLGHVSERGLVELAKQGSLGKKILNKLDFCDNCTLGKQHKVK 430
Query: 182 ---AFSSSKRRSKEHKNEVFNTFLVWKAIVENKTGRKLKTLRSDNETEYTDGAFKEFCNQ 238
S R + ++++ + V EN+TG KLK LR+DN E+ F EFC +
Sbjct: 431 FGVGVHKSSRPFEYVHSDLWGSASVSTHDGENQTGTKLKVLRTDNGLEFGSEQFNEFCRK 490
Query: 239 EGIVRHWTVVNTPQQNRVAERLNRTLLEKARCMRSNPGLGVEWWEESVATACYIVNRSPH 298
+GI RH TV TPQ +AER+NRTLLE+ RCM GL +W E+V TA Y++N+ P
Sbjct: 491 KGIKRHRTVAYTPQMIGLAERMNRTLLERVRCMLLGAGLPKRFWGEAVNTAAYLINKCPS 550
Query: 299 SSLDGDIPYEVWS-----------------------------------GYATRVKGYQLR 323
+ +D P EVWS GY VKGY+L
Sbjct: 551 TGIDLKTPMEVWSGRPSDYSNLRVFRSLAFAHVKQDKLDVRAVKCVFIGYPEGVKGYKLW 610
Query: 324 CTED--KKFVISRDVVFDESSIVAVAKATVPSCGDVGSTKAQVAEVEAKDQRVSRNHDQV 381
KF+ISRD+ FDE+ + K + + K Q + D+R + QV
Sbjct: 611 MMGPGRSKFIISRDITFDETRMRMKCK-DLEEIPETREEKIQFEVEPSTDEREEEDQTQV 669
Query: 382 ---------------------------------------------EHQDSTP------DE 390
E QDS P E
Sbjct: 670 PEESGSDETTVPDYQLARDRERRVIHPPNRFGYADLICYALNAAEELQDSEPKNFREASE 729
Query: 391 EIDEHD----HEEVYKKKEDSSEIKGTRYKARLVAKGYAHKEGVDYNEIFSPVVKRTFIL 446
ID D + V+KKKE ++ RYKARLVAKG+ EG+DYNEIFSPVVK I
Sbjct: 730 SIDGKDWVVGSKWVFKKKEGVPGVEAPRYKARLVAKGFTQVEGIDYNEIFSPVVKHCPIR 789
Query: 447 LLLSNVAHSDLELEQLDVKTGFLHDDLEEEIYMAQPEGYKVEGKENQVCRLRKSLYGLKQ 506
+L++ V DLELEQ+DVKT FLH +LEE YM QPEG+ VE ++VC L+KSLYGLKQ
Sbjct: 790 VLMAIVNQYDLELEQMDVKTAFLHGELEETNYMQQPEGF-VE-DNSKVCLLKKSLYGLKQ 847
Query: 507 SPCQ 510
SP Q
Sbjct: 848 SPRQ 851
>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 294 bits (753), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 166/379 (43%), Positives = 211/379 (55%), Gaps = 70/379 (18%)
Query: 3 EAGYVSEDSHECSSVTEMSEKISD-KWMLDSGASHHMCPNRKWFTTYRSIDGGTVIMGND 61
EA V DS ++ S+K S +W+LDSG + HMCP + FTT +D G V+MGND
Sbjct: 261 EAANVETDSDGDVMISVSSDKRSKTEWILDSGCTFHMCPYKDLFTTLEPVDSGVVLMGND 320
Query: 62 NTCQTAGLRTIRIKMHDGV--------------RN----------DCKIIIENDSIKVVK 97
C+ AG+ TI+IK HDG RN CK E +KV K
Sbjct: 321 TQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSK 380
Query: 98 GYLVAMRGTRYGNLYTLSGTIIMGDVAVGISGRDPTACTRLWHMRLGHMSEKGISLMCGK 157
G +V ++ R G+LY L G+I+ G AV S D A T+LWHMRLGHMSEKG+ L+ +
Sbjct: 381 GAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDA-TKLWHMRLGHMSEKGMHLLSKQ 439
Query: 158 GLLKDMKKPCMEFCEHCVFGKAHR-AFSSSKRRSK------------------------- 191
GLL + +EFCEHCVFGK R +FS++ R+K
Sbjct: 440 GLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYM 499
Query: 192 ----------------EHKNEVFNTFLVWKAIVENKTGRKLKTLRSDNETEYTDGAFKEF 235
HKNE F TF WK +VE +TG+K+K LR+DN E+ +G F EF
Sbjct: 500 MTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEF 559
Query: 236 CNQEGIVRHWTVVNTPQQNRVAERLNRTLLEKARCMRSNPGL--GVEWWEESVATACYIV 293
C GI RH T+ PQQN VAERLNRT+LE+ARCM SN GL E W E+ +TACY++
Sbjct: 560 CANHGIARHKTIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLI 619
Query: 294 NRSPHSSLDGDIPYEVWSG 312
NRSPHSSL+ IP E+WSG
Sbjct: 620 NRSPHSSLNFKIPEEIWSG 638
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 285 bits (728), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/443 (36%), Positives = 229/443 (51%), Gaps = 106/443 (23%)
Query: 25 SDKWMLDSGASHHMCPNRKWFTTYRSIDGGTVIMGNDNTCQTAGLRTIRIKMHDG----- 79
SD W+LDSGAS+H+CP R+WFTTY +DGG++ M N + C+ G +I+I+ HDG
Sbjct: 276 SDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTL 335
Query: 80 --VRNDCKIIIEN-------DS-----------IKVVKGYLVAMRGTRYGNLYTLSGTII 119
VR+ ++ +N DS ++V KG + ++G G LY L G+ +
Sbjct: 336 NEVRH-VPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTV 394
Query: 120 MGDVAVGISGRDPTACTRLWHMRLGHMSEKGISLMCGKGLLKDMKKPCMEFCEHCVFGKA 179
G V S T+LWH+RLGHM E+G+ ++ + LL K +EFCEHCVFGK
Sbjct: 395 TGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKL 454
Query: 180 HR-AFSSSKRRSK-----------------------------------------EHKNEV 197
HR F + R+K +HK+E
Sbjct: 455 HRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEA 514
Query: 198 FNTFLVWKAIVENKTGRKLKTLRSDNETEYTDGAFKEFCNQEGIVRHWTVVNTPQQNRVA 257
F F WK ++EN+TG+K+K LR+DN E+ F +FC EGI RH TV NTPQQN VA
Sbjct: 515 FQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVA 574
Query: 258 ERLNRTLLEKARCMRSNPGLGVEWWEESVATACYIVNRSPHSSLDGDIPYEVWS------ 311
ER+N+TLLE+ARCM SN GL +W E+V+TACY++NR PH+ + P E+WS
Sbjct: 575 ERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADY 634
Query: 312 -----------------------------GYATRVKGYQLRCTEDKKFVISRDVVFDESS 342
GY VKG+++ +K+ ++SR+VVFDES
Sbjct: 635 SNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESP 694
Query: 343 IV-AVAKATVPSCGDVGSTKAQV 364
++ + K T S + GS QV
Sbjct: 695 LLRTIVKPTTTS--ETGSLDKQV 715
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 93/111 (83%)
Query: 400 VYKKKEDSSEIKGTRYKARLVAKGYAHKEGVDYNEIFSPVVKRTFILLLLSNVAHSDLEL 459
V+KKKE S +G +YKAR+VA+G+ +EGVDYNEIFSPVV+ T I +LL+ VAH +LEL
Sbjct: 840 VFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLEL 899
Query: 460 EQLDVKTGFLHDDLEEEIYMAQPEGYKVEGKENQVCRLRKSLYGLKQSPCQ 510
EQLDVKT FLH +LEEEIYM QP+G++V GKEN VC+L+KSLYGLKQSP Q
Sbjct: 900 EQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQ 950