BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g2000.1
(142 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-clas... 192 2e-58
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 201 8e-58
BAA22288.1 polyprotein [Oryza australiensis] 201 2e-57
>AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92972.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 305
Score = 192 bits (487), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 93/135 (68%), Positives = 103/135 (76%)
Query: 1 MEDSIRGFLLMSHGITLCKNLCPKKPDELEYMVDGPYASAIGSIMYAMICTRPDVSCALS 60
M+DS +GFL MSH I L KN C + DE M PYASAIGSIMYAM+CTRPDVS ALS
Sbjct: 41 MQDSKKGFLPMSHDINLGKNQCSQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVSYALS 100
Query: 61 MCSRYQSNPVETHWTATKNFLKYSRRTKDHFVVYGGEETLKVVGHVDASFQRDRDDFRSQ 120
SRYQS+P ETHW A KN LKY RTKD F+VYGG+E L V + DASFQ D+DDFRSQ
Sbjct: 101 ATSRYQSDPGETHWIAVKNILKYLIRTKDMFLVYGGQEELVVNDYTDASFQTDKDDFRSQ 160
Query: 121 SAYVFCLNGGAVSWK 135
S +VFCLNGGAVSWK
Sbjct: 161 SGFVFCLNGGAVSWK 175
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 201 bits (512), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 95/135 (70%), Positives = 108/135 (80%)
Query: 1 MEDSIRGFLLMSHGITLCKNLCPKKPDELEYMVDGPYASAIGSIMYAMICTRPDVSCALS 60
M++S RGFL M+HGI L KN CP DE + M D PYASAIGSIMYAMICTRPDVS ALS
Sbjct: 638 MQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSYALS 697
Query: 61 MCSRYQSNPVETHWTATKNFLKYSRRTKDHFVVYGGEETLKVVGHVDASFQRDRDDFRSQ 120
+ SRYQ++P E HWTA KN LKY RRTKD F+VYGG+E L V G+ DASFQ D+DD+RSQ
Sbjct: 698 VTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKDDYRSQ 757
Query: 121 SAYVFCLNGGAVSWK 135
S +VF LNGGAVSWK
Sbjct: 758 SGFVFILNGGAVSWK 772
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 201 bits (511), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 106/135 (78%)
Query: 1 MEDSIRGFLLMSHGITLCKNLCPKKPDELEYMVDGPYASAIGSIMYAMICTRPDVSCALS 60
M DS +GFL MSHGI L KN CP+ DE M PYASAIGSIMYAM+CTRPDVS ALS
Sbjct: 1058 MHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALS 1117
Query: 61 MCSRYQSNPVETHWTATKNFLKYSRRTKDHFVVYGGEETLKVVGHVDASFQRDRDDFRSQ 120
SRYQS+P E HWTA KN LKY RRTKD F+VYGGEE L V G+ DASFQ D+DD+RSQ
Sbjct: 1118 ATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQ 1177
Query: 121 SAYVFCLNGGAVSWK 135
S +VFCLNGGAVSWK
Sbjct: 1178 SGFVFCLNGGAVSWK 1192