BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g2010.1
(104 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 170 5e-47
BAA22288.1 polyprotein [Oryza australiensis] 169 7e-47
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 166 9e-46
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 170 bits (430), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 80/104 (76%), Positives = 87/104 (83%)
Query: 1 MLKSIRIILAIATHYDYEIWKMDVKTAFLNGNLEEDVYMTQPEGFEDSNNVGKVCKLKRS 60
MLKSIRIILAIA ++DYEIW+MDVKTAFLNG L EDVYMTQPEGF D NN KVCKL++S
Sbjct: 880 MLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKS 939
Query: 61 IYGLKQARRSWNIRFGEAIKEFCFLKNPEESCIYKKVSGSNLVF 104
IYGLKQA RSWNIRF E IK F F+KN EE C+Y KVSGS LV
Sbjct: 940 IYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVSGSTLVI 983
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 169 bits (429), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 90/104 (86%)
Query: 1 MLKSIRIILAIATHYDYEIWKMDVKTAFLNGNLEEDVYMTQPEGFEDSNNVGKVCKLKRS 60
MLKSIRIILAIA ++DYEIW+MDVKTAFLNGNL EDVYM QP+GF D + GK+CKL++S
Sbjct: 884 MLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKS 943
Query: 61 IYGLKQARRSWNIRFGEAIKEFCFLKNPEESCIYKKVSGSNLVF 104
IYGLKQA RSWNIRF E IK F F+KN EE+C+YKKVSGS +VF
Sbjct: 944 IYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVF 987
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 166 bits (420), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 85/104 (81%)
Query: 1 MLKSIRIILAIATHYDYEIWKMDVKTAFLNGNLEEDVYMTQPEGFEDSNNVGKVCKLKRS 60
MLKSIRI+LA A HYDYEIW+MDVKTAFLNGNLEE VYMTQPEGF KVCKL RS
Sbjct: 531 MLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRS 590
Query: 61 IYGLKQARRSWNIRFGEAIKEFCFLKNPEESCIYKKVSGSNLVF 104
IYGLKQA RSWN+RF EAIKEF F++N EE C+YKK SGS + F
Sbjct: 591 IYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAF 634