BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g2280.1
(473 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 754 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 727 0.0
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 735 0.0
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/470 (74%), Positives = 411/470 (87%)
Query: 2 KTDKDGNVSVFKARLVAKGYRQVQGIDYEETFSPVAMLKSIRIVLAIAAHYDYEIWQMDV 61
K D DGNV ++KARLVAKG++Q+QG+DY+ETFSPVAMLKSIRI+LAIAA++DYEIWQMDV
Sbjct: 848 KADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDV 907
Query: 62 KTAFLNGKLEEDVYMTQPEGFEDSKNDGKVCKLQRSIYGLKQASRSWNLRFDEKIKEFGF 121
KTAFLNG L EDVYM QP+GF D ++ GK+CKLQ+SIYGLKQASRSWN+RFDE IK FGF
Sbjct: 908 KTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGF 967
Query: 122 LKNEEESCVYKKVSGSNLVFLVLYVDDILIGGNNIPMLNSVKEWLRKCFSMKDLGDAEYI 181
+KNEEE+CVYKKVSGS +VFL+LYVDDIL+ GN+IPML SVK L+ FSMKDLG+A YI
Sbjct: 968 IKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYI 1027
Query: 182 LGIKIYRDRSKRMIGLSQETYIDKILGRFKMEDSKRGFLPMTHGTTLSKTQCPRDPDELA 241
LGI+IYRDRSKR+IGLSQ TYIDK+L RF M DSK+GFLPM+HG LSK QCP+ DE
Sbjct: 1028 LGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERN 1087
Query: 242 HMKKVPYASAIGSIMYAMVCTRPDISYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDH 301
M VPYASAIGSIMYAM+CTRPD+SYALS SRYQS+PGE HWTA KNILKYLRRTKD
Sbjct: 1088 KMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDM 1147
Query: 302 FLVYGGKDELIVEGHVDASFQTNKDDFRSQSGYVFCLNGGAESWKSSKQTTVAYSTTEAE 361
FLVYGG+++L+V G+ DASFQT+KDD+RSQSG+VFCLNGGA SWKSSKQ TVA STTEAE
Sbjct: 1148 FLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAE 1207
Query: 362 YLAASEAAKEGVWIKKFITELGVVPSIENGVTLYCDKNGAIAQAKEPRAHQKSKHILRKY 421
Y+AASEAAKE VWIKKF++ELGV+ S ++LYCD +GAIAQAKEPR+HQKSKHILR+Y
Sbjct: 1208 YIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRY 1267
Query: 422 HVIREITERKDVVICKVDTDDNVADPLTKPLPQPKYQSHRRGIGIKRIDE 471
H+IREI +R DV ICKV TD N+ADPLTKPLPQPK+++H R +GI+ + +
Sbjct: 1268 HLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRYLHD 1317
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/468 (73%), Positives = 394/468 (84%)
Query: 2 KTDKDGNVSVFKARLVAKGYRQVQGIDYEETFSPVAMLKSIRIVLAIAAHYDYEIWQMDV 61
K D DGN+ ++KA LVAKGY+QV GIDY+ET+SPVAMLKSIRI+LA AAHYDYEIWQMDV
Sbjct: 495 KIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDV 554
Query: 62 KTAFLNGKLEEDVYMTQPEGFEDSKNDGKVCKLQRSIYGLKQASRSWNLRFDEKIKEFGF 121
KTAFLNG LEE VYMTQPEGF + KVCKL RSIYGLKQASRSWNLRF+E IKEF F
Sbjct: 555 KTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDF 614
Query: 122 LKNEEESCVYKKVSGSNLVFLVLYVDDILIGGNNIPMLNSVKEWLRKCFSMKDLGDAEYI 181
++NEEE CVYKK SGS + FLVLYVDDIL+ GN+IP+L SVK WL CFSMKD+G+A YI
Sbjct: 615 IRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYI 674
Query: 182 LGIKIYRDRSKRMIGLSQETYIDKILGRFKMEDSKRGFLPMTHGTTLSKTQCPRDPDELA 241
LGI+IYRDR ++IGLSQ+TYIDK+L RF M DSK+GF+PM+HG TLSKTQCP DE
Sbjct: 675 LGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERE 734
Query: 242 HMKKVPYASAIGSIMYAMVCTRPDISYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDH 301
M K+PYASAIGSIMYAM+ TRPD++ ALSM SRYQS+PGE HW +NI KYLRRTKD
Sbjct: 735 RMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDK 794
Query: 302 FLVYGGKDELIVEGHVDASFQTNKDDFRSQSGYVFCLNGGAESWKSSKQTTVAYSTTEAE 361
FLVYGG +EL+V G+ DASFQT+KDDFRSQSG+ FCLNGGA SWKS+KQ+TVA STTEAE
Sbjct: 795 FLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAE 854
Query: 362 YLAASEAAKEGVWIKKFITELGVVPSIENGVTLYCDKNGAIAQAKEPRAHQKSKHILRKY 421
Y+AASEAAKE VWI+KFITELGVVPSI + LYCD NGAIAQAKEP++HQKSKHI R+Y
Sbjct: 855 YIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRY 914
Query: 422 HVIREITERKDVVICKVDTDDNVADPLTKPLPQPKYQSHRRGIGIKRI 469
H+IREI +R DV I +V TD NVAD TKPLPQPK++SH IGI+ I
Sbjct: 915 HLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKHESHTTAIGIRFI 962
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/470 (73%), Positives = 405/470 (86%)
Query: 2 KTDKDGNVSVFKARLVAKGYRQVQGIDYEETFSPVAMLKSIRIVLAIAAHYDYEIWQMDV 61
K D DGNV + KARLVAKG+RQVQG+DY+ETFS VAMLKSIRI+LAIAA++DYEIWQMDV
Sbjct: 844 KIDMDGNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDV 903
Query: 62 KTAFLNGKLEEDVYMTQPEGFEDSKNDGKVCKLQRSIYGLKQASRSWNLRFDEKIKEFGF 121
KTAFLNGKL EDVYMTQPEGF D N KVCKLQ+SIYGLKQASRSWN+RFDE+IK FGF
Sbjct: 904 KTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGF 963
Query: 122 LKNEEESCVYKKVSGSNLVFLVLYVDDILIGGNNIPMLNSVKEWLRKCFSMKDLGDAEYI 181
+KN+EE CVY KVSGS LV L+LYVDDIL+ GN+IPML SVK L+ FSMKDLG+A YI
Sbjct: 964 VKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEAAYI 1023
Query: 182 LGIKIYRDRSKRMIGLSQETYIDKILGRFKMEDSKRGFLPMTHGTTLSKTQCPRDPDELA 241
LGIKIYRDRS+R+IGLSQ TYIDK+L RF M+++K+GFLPM+HG + SK+Q P DE
Sbjct: 1024 LGIKIYRDRSRRLIGLSQSTYIDKVLIRFNMQNTKKGFLPMSHGISPSKSQRPSTTDERD 1083
Query: 242 HMKKVPYASAIGSIMYAMVCTRPDISYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDH 301
M +PYASAIGSIMYAM+CTR D+SYALS+ SRYQ++PGE HWTA KNILKYLRRTKD
Sbjct: 1084 RMNGIPYASAIGSIMYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRTKDA 1143
Query: 302 FLVYGGKDELIVEGHVDASFQTNKDDFRSQSGYVFCLNGGAESWKSSKQTTVAYSTTEAE 361
FL+YGG +EL+V G+ DASFQT+KDD+RSQSG+VF LNGGA SWKSSKQ TVA STT+AE
Sbjct: 1144 FLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTKAE 1203
Query: 362 YLAASEAAKEGVWIKKFITELGVVPSIENGVTLYCDKNGAIAQAKEPRAHQKSKHILRKY 421
Y+AASEAAKEGVWI+ FI ELGVVPS + + LYCD NGAIAQAKEPR+HQKSKHILR+Y
Sbjct: 1204 YIAASEAAKEGVWIRNFIAELGVVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRY 1263
Query: 422 HVIREITERKDVVICKVDTDDNVADPLTKPLPQPKYQSHRRGIGIKRIDE 471
H+IRE+ +R DV ICK+ TD NVADPLTKPL QPK+++H R IGI+ +++
Sbjct: 1264 HLIRELVDRGDVKICKIHTDLNVADPLTKPLTQPKHEAHTRAIGIRYLND 1313