BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g2290.1
(103 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAE04999.2 OSJNBb0093G06.7 [Oryza sativa Japonica Group] 66 2e-10
AAP44605.1 putative polyprotein [Oryza sativa Japonica Group] 65 2e-10
ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass... 65 2e-10
>CAE04999.2 OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 53 ARLIELSQRQ-ELLLIEDNEPSTYKEAMTSPDSEKWLGAMKSEMESISENQV 103
AR L+ RQ ++LL++++EP+TY+E M PDSEKWLGAMKSE+ES+ NQV
Sbjct: 658 ARYALLTIRQRDILLLDNDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQV 709
>AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 45 VVRAPCGSARLIELSQRQELLLIEDNEPSTYKEAMTSPDSEKWLGAMKSEMESISENQV 103
+ R P A L S ++++LL++++EP+TY+EAM PD+EKWLGAMKSE+ES+ NQV
Sbjct: 632 IRRTPARYALLT--SGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQV 688
>ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 45 VVRAPCGSARLIELSQRQELLLIEDNEPSTYKEAMTSPDSEKWLGAMKSEMESISENQV 103
+ R P A L S ++++LL++++EP+TY+EAM PD+EKWLGAMKSE+ES+ NQV
Sbjct: 719 IRRTPARYALLT--SGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQV 775