BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000038.1_g0010.1
(191 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN65222.1 hypothetical protein VITISV_038665 [Vitis vinifera] 106 2e-23
KYP57304.1 Retrovirus-related Pol polyprotein from transposon TN... 94 2e-19
KYP51251.1 Retrovirus-related Pol polyprotein from transposon TN... 91 4e-19
>CAN65222.1 hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 20/196 (10%)
Query: 5 RTHGQILLCLSKEVLREVATETTADGLWSKLETRCQIRRRRQGSTIVCIPAIIWKRCYFF 64
R H ILL L+ EVLREVA ETTA GLW KLE++ Q + + ++++
Sbjct: 245 RAHSAILLSLAXEVLREVADETTAVGLWRKLESKYQKK---------SLTNRLYQKRRLH 295
Query: 65 YVLQNNYNLEDVKAALNSKELRR--RSMKESNSEDGLIV-RGRSQHVVDGKGRSRSKSKP 121
+ ++ ++ DVK AL SKEL++ E + E GL V RGRS +G GRS+S+SK
Sbjct: 296 TLKMDSISINDVKDALQSKELQKLVSGSGEGSVETGLTVSRGRSME-RNGGGRSKSRSKS 354
Query: 122 K-KYRCFNCKKEGHFKKNWPELRKKPGDAA------VIEEDDGSVLAIIEECDEVMVLAI 174
K RCF+CK++GHF+KN P+ +K G + V+ + D +E + VL +
Sbjct: 355 KAAMRCFHCKEKGHFRKNCPQRQKGIGQGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTV 414
Query: 175 NDCFAEDRWILDTGMS 190
+ + + WILDTG S
Sbjct: 415 STSSSAESWILDTGAS 430
>KYP57304.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 383
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 96/195 (49%), Gaps = 16/195 (8%)
Query: 5 RTHGQILLCLSKEVLREVATETTADGLWSKLETRCQIRR--RRQGSTIVCIPAIIWKRCY 62
+ H ILL L+ EVLREV ETTA G+W LE + Q + R G + I C
Sbjct: 22 KAHSLILLSLTDEVLREVGEETTAAGMWKMLEDKFQQKSLTNRIGVKVDDEDLAIILLCS 81
Query: 63 FFYVLQNNY--NLEDVKAALNSKELRRRSMKESNSED-GLIV-RGRSQ---HVVDGKGRS 115
L +Y L +VK L SKEL+RR SN +D GL RGRS + G RS
Sbjct: 82 ----LPKSYEITLNNVKDNLQSKELKRRVFSSSNVDDVGLTASRGRSMERGNSSKGHTRS 137
Query: 116 RSKSKPKKYRCFNCKKEGHFKKNWPELRKK---PGDAAVIEEDDGSVLAIIEECDEVMVL 172
S K KK RC+ CK+ GH +KN P+L+K AAV+ +E D VL
Sbjct: 138 NSLGKSKKVRCYKCKEVGHIRKNCPQLKKDRNINASAAVVHSSATVSGESSDEGDGGDVL 197
Query: 173 AINDCFAEDRWILDT 187
++ D W++DT
Sbjct: 198 TVSTTGFVDTWVMDT 212
>KYP51251.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 240
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Query: 5 RTHGQILLCLSKEVLREVATETTADGLWSKLETRCQIRRRRQGSTIVCIPAIIWKRCYFF 64
+ H ILL L+ EVLREV ET A G+W + + +V I + Y
Sbjct: 12 KAHSLILLSLTDEVLREVGEETMAAGMWKIIGVKVD------DEDLVIILLCSLPKSYEN 65
Query: 65 YVLQNNYN-----LEDVKAALNSKELRRRSMKESNSED-GLIV-RGRSQ---HVVDGKGR 114
++ Y + +VK L KEL+RR + SN +D GLIV RGRS + G R
Sbjct: 66 FIDTMLYGRDSIIVNNVKDNLQFKELKRRVVSSSNVDDVGLIVNRGRSMERGNNSKGHTR 125
Query: 115 SRSKSKPKKYRCFNCKKEGHFKKNWPELRKKPG---DAAVIEEDDGSVLAIIEECDEVMV 171
S S S KK RC+ CK+ GH +KN P+L+K AAV+ ++E D V
Sbjct: 126 SNSLSNSKKVRCYKCKEVGHIRKNGPQLKKDRNSNVSAAVVRSSATVSGESLDEGDVGDV 185
Query: 172 LAINDCFAEDRWILDT 187
L IN D W++DT
Sbjct: 186 LTINTNGFADTWVMDT 201