BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000042.1_g0310.1
(211 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAT57914.1 Retrovirus-related Pol polyprotein from transposon TN... 309 e-100
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN... 298 3e-94
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 298 1e-91
>JAT57914.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 529
Score = 309 bits (791), Expect = e-100, Method: Compositional matrix adjust.
Identities = 144/212 (67%), Positives = 172/212 (81%), Gaps = 1/212 (0%)
Query: 1 MGNDAPSKVVGIGTIQIKMHDGVVRTITDIRHVPDLKKNLISLGILDDNGCKYVGEGGVL 60
MGN+AP K +GIG+I+IKM+DG+VRT+T +RHV DLKKNLISLG L+ NGCKY EGGVL
Sbjct: 315 MGNNAPRKTIGIGSIRIKMYDGIVRTLTQVRHVLDLKKNLISLGTLEANGCKYSAEGGVL 374
Query: 61 RISKGSLTVMKGLKKNGLYVLQGNTVTGSVA-VSSSDKEVETTKLWHMRLGHMSERGMTI 119
R+S+G+L +MK + N LY L G TVTG+ A VS S E E TKLWHMRLGHMSE+GMT+
Sbjct: 375 RVSRGALILMKVKRTNSLYTLIGTTVTGAAAAVSPSMSESEVTKLWHMRLGHMSEKGMTM 434
Query: 120 LSKQGLLCGQMVGKLEFCEHCVFGKQCQVKFSTAVHNTKGTLDYIHSDLWGHSQVNSHNG 179
LSK+GLLCGQ GK+EFCEHC+FGKQ +V F T +H TK TLDYIHSDLWG ++V S G
Sbjct: 435 LSKRGLLCGQSTGKVEFCEHCIFGKQRKVSFQTTIHRTKATLDYIHSDLWGPARVPSKGG 494
Query: 180 GRYMLTLIDDFSRKVWVYILKRKDEAFVKFKQ 211
RY LT IDD+SRKVWV++LK KDE F+KFKQ
Sbjct: 495 ARYFLTFIDDYSRKVWVFMLKHKDEVFMKFKQ 526
>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 298 bits (762), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 138/211 (65%), Positives = 170/211 (80%)
Query: 1 MGNDAPSKVVGIGTIQIKMHDGVVRTITDIRHVPDLKKNLISLGILDDNGCKYVGEGGVL 60
MGND K+ GIGTIQIK HDG ++T++++R +PDLK+NLISLG L+ GCKY EGGVL
Sbjct: 317 MGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVL 376
Query: 61 RISKGSLTVMKGLKKNGLYVLQGNTVTGSVAVSSSDKEVETTKLWHMRLGHMSERGMTIL 120
++SKG++ ++K + LY+LQG+ VTGS AVSSS + + TKLWHMRLGHMSE+GM +L
Sbjct: 377 KVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLL 436
Query: 121 SKQGLLCGQMVGKLEFCEHCVFGKQCQVKFSTAVHNTKGTLDYIHSDLWGHSQVNSHNGG 180
SKQGLL Q +GKLEFCEHCVFGKQ +V FSTA H TKGTLDYIHSDLWG S+V S+ G
Sbjct: 437 SKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGC 496
Query: 181 RYMLTLIDDFSRKVWVYILKRKDEAFVKFKQ 211
RYM+T+IDDFSRKVWVY L+ K+E F FK+
Sbjct: 497 RYMMTIIDDFSRKVWVYFLRHKNETFPTFKK 527
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 298 bits (762), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 138/211 (65%), Positives = 170/211 (80%)
Query: 1 MGNDAPSKVVGIGTIQIKMHDGVVRTITDIRHVPDLKKNLISLGILDDNGCKYVGEGGVL 60
MGND K+ GIGTIQIK HDG ++T++++R +PDLK+NLISLG L+ GCKY EGGVL
Sbjct: 21 MGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVL 80
Query: 61 RISKGSLTVMKGLKKNGLYVLQGNTVTGSVAVSSSDKEVETTKLWHMRLGHMSERGMTIL 120
++SKG++ ++K + LY+LQG+ VTGS AVSSS + + TKLWHMRLGHMSE+GM +L
Sbjct: 81 KVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLL 140
Query: 121 SKQGLLCGQMVGKLEFCEHCVFGKQCQVKFSTAVHNTKGTLDYIHSDLWGHSQVNSHNGG 180
SKQGLL Q +GKLEFCEHCVFGKQ +V FSTA H TKGTLDYIHSDLWG S+V S+ G
Sbjct: 141 SKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGC 200
Query: 181 RYMLTLIDDFSRKVWVYILKRKDEAFVKFKQ 211
RYM+T+IDDFSRKVWVY L+ K+E F FK+
Sbjct: 201 RYMMTIIDDFSRKVWVYFLRHKNETFPTFKK 231