BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000042.1_g0310.1
         (211 letters)

Database: ./nr 
           95,329,361 sequences; 35,143,497,570 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JAT57914.1 Retrovirus-related Pol polyprotein from transposon TN...   309   e-100
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN...   298   3e-94
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN...   298   1e-91

>JAT57914.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Anthurium amnicola]
          Length = 529

 Score =  309 bits (791), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 172/212 (81%), Gaps = 1/212 (0%)

Query: 1   MGNDAPSKVVGIGTIQIKMHDGVVRTITDIRHVPDLKKNLISLGILDDNGCKYVGEGGVL 60
           MGN+AP K +GIG+I+IKM+DG+VRT+T +RHV DLKKNLISLG L+ NGCKY  EGGVL
Sbjct: 315 MGNNAPRKTIGIGSIRIKMYDGIVRTLTQVRHVLDLKKNLISLGTLEANGCKYSAEGGVL 374

Query: 61  RISKGSLTVMKGLKKNGLYVLQGNTVTGSVA-VSSSDKEVETTKLWHMRLGHMSERGMTI 119
           R+S+G+L +MK  + N LY L G TVTG+ A VS S  E E TKLWHMRLGHMSE+GMT+
Sbjct: 375 RVSRGALILMKVKRTNSLYTLIGTTVTGAAAAVSPSMSESEVTKLWHMRLGHMSEKGMTM 434

Query: 120 LSKQGLLCGQMVGKLEFCEHCVFGKQCQVKFSTAVHNTKGTLDYIHSDLWGHSQVNSHNG 179
           LSK+GLLCGQ  GK+EFCEHC+FGKQ +V F T +H TK TLDYIHSDLWG ++V S  G
Sbjct: 435 LSKRGLLCGQSTGKVEFCEHCIFGKQRKVSFQTTIHRTKATLDYIHSDLWGPARVPSKGG 494

Query: 180 GRYMLTLIDDFSRKVWVYILKRKDEAFVKFKQ 211
            RY LT IDD+SRKVWV++LK KDE F+KFKQ
Sbjct: 495 ARYFLTFIDDYSRKVWVFMLKHKDEVFMKFKQ 526


>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score =  298 bits (762), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 138/211 (65%), Positives = 170/211 (80%)

Query: 1   MGNDAPSKVVGIGTIQIKMHDGVVRTITDIRHVPDLKKNLISLGILDDNGCKYVGEGGVL 60
           MGND   K+ GIGTIQIK HDG ++T++++R +PDLK+NLISLG L+  GCKY  EGGVL
Sbjct: 317 MGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVL 376

Query: 61  RISKGSLTVMKGLKKNGLYVLQGNTVTGSVAVSSSDKEVETTKLWHMRLGHMSERGMTIL 120
           ++SKG++ ++K  +   LY+LQG+ VTGS AVSSS  + + TKLWHMRLGHMSE+GM +L
Sbjct: 377 KVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLL 436

Query: 121 SKQGLLCGQMVGKLEFCEHCVFGKQCQVKFSTAVHNTKGTLDYIHSDLWGHSQVNSHNGG 180
           SKQGLL  Q +GKLEFCEHCVFGKQ +V FSTA H TKGTLDYIHSDLWG S+V S+ G 
Sbjct: 437 SKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGC 496

Query: 181 RYMLTLIDDFSRKVWVYILKRKDEAFVKFKQ 211
           RYM+T+IDDFSRKVWVY L+ K+E F  FK+
Sbjct: 497 RYMMTIIDDFSRKVWVYFLRHKNETFPTFKK 527


>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1032

 Score =  298 bits (762), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 138/211 (65%), Positives = 170/211 (80%)

Query: 1   MGNDAPSKVVGIGTIQIKMHDGVVRTITDIRHVPDLKKNLISLGILDDNGCKYVGEGGVL 60
           MGND   K+ GIGTIQIK HDG ++T++++R +PDLK+NLISLG L+  GCKY  EGGVL
Sbjct: 21  MGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVL 80

Query: 61  RISKGSLTVMKGLKKNGLYVLQGNTVTGSVAVSSSDKEVETTKLWHMRLGHMSERGMTIL 120
           ++SKG++ ++K  +   LY+LQG+ VTGS AVSSS  + + TKLWHMRLGHMSE+GM +L
Sbjct: 81  KVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLL 140

Query: 121 SKQGLLCGQMVGKLEFCEHCVFGKQCQVKFSTAVHNTKGTLDYIHSDLWGHSQVNSHNGG 180
           SKQGLL  Q +GKLEFCEHCVFGKQ +V FSTA H TKGTLDYIHSDLWG S+V S+ G 
Sbjct: 141 SKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGC 200

Query: 181 RYMLTLIDDFSRKVWVYILKRKDEAFVKFKQ 211
           RYM+T+IDDFSRKVWVY L+ K+E F  FK+
Sbjct: 201 RYMMTIIDDFSRKVWVYFLRHKNETFPTFKK 231


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