BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000042.1_g0330.1
(232 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 322 e-105
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 322 e-100
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 325 e-100
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 322 bits (825), Expect = e-105, Method: Compositional matrix adjust.
Identities = 156/258 (60%), Positives = 188/258 (72%), Gaps = 26/258 (10%)
Query: 1 MVALYDMELEQLDVKTAFLHGELEEQIYMRQPEGFEILGKEDHVCLLKKSLYGLKQSHRQ 60
VAL+D+ELEQLDVKTAFLHGELEE+IYM QPEGF + KE VC LKKSLYGLKQ+ RQ
Sbjct: 82 FVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQ 141
Query: 61 WYKRFDTFMVKNGYARSRYDSCVYHRKLSDGSYVYLLLYMDDMLIAAKDMSKIRMLKGQL 120
WYK+FD+FM+ GY+RS+YD C+Y ++ DG+++YLLLY+DDMLIA++D S I LK QL
Sbjct: 142 WYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQL 201
Query: 121 KGEFQMKDLGASRKILGMEIRRDRSAGKLFLSQKTYIE---------------------- 158
EF+MK+LGA++KILGMEI RDR GKLFLSQ+ YIE
Sbjct: 202 NNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHF 261
Query: 159 ----ELSPTTDYETEYMSRVPYANAVGSIMYVSVCTRPHISHAVSVVSRYMGRPGKGHWQ 214
+L P T E E MS VPYA+AVGS+MY VCTRP +++AVS+VSRYM PGK HW
Sbjct: 262 KLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWS 321
Query: 215 AVKWILRYLGGTPELGLV 232
AVKWI RYL GT +GLV
Sbjct: 322 AVKWIFRYLKGTSNIGLV 339
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 322 bits (824), Expect = e-100, Method: Compositional matrix adjust.
Identities = 156/258 (60%), Positives = 188/258 (72%), Gaps = 26/258 (10%)
Query: 1 MVALYDMELEQLDVKTAFLHGELEEQIYMRQPEGFEILGKEDHVCLLKKSLYGLKQSHRQ 60
VAL+D+ELEQLDVKTAFLHGELEE+IYM QPEGF + KE VC LKKSLYGLKQ+ RQ
Sbjct: 611 FVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQ 670
Query: 61 WYKRFDTFMVKNGYARSRYDSCVYHRKLSDGSYVYLLLYMDDMLIAAKDMSKIRMLKGQL 120
WYK+FD+FM+ GY+RS+YD C+Y ++ DG+++YLLLY+DDMLIA++D S I LK QL
Sbjct: 671 WYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQL 730
Query: 121 KGEFQMKDLGASRKILGMEIRRDRSAGKLFLSQKTYIE---------------------- 158
EF+MK+LGA++KILGMEI RDR GKLFLSQ+ YIE
Sbjct: 731 NNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHF 790
Query: 159 ----ELSPTTDYETEYMSRVPYANAVGSIMYVSVCTRPHISHAVSVVSRYMGRPGKGHWQ 214
+L P T E E MS VPYA+AVGS+MY VCTRP +++AVS+VSRYM PGK HW
Sbjct: 791 KLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWS 850
Query: 215 AVKWILRYLGGTPELGLV 232
AVKWI RYL GT +GLV
Sbjct: 851 AVKWIFRYLKGTSNIGLV 868
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 325 bits (834), Expect = e-100, Method: Compositional matrix adjust.
Identities = 159/258 (61%), Positives = 197/258 (76%), Gaps = 26/258 (10%)
Query: 1 MVALYDMELEQLDVKTAFLHGELEEQIYMRQPEGFEILGKEDHVCLLKKSLYGLKQSHRQ 60
+VA ++ELEQLDVKTAFLHGELEE+IYM QP+GF++ GKE+HVC LKKSLYGLKQS RQ
Sbjct: 891 IVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQ 950
Query: 61 WYKRFDTFMVKNGYARSRYDSCVYHRKLSDGSYVYLLLYMDDMLIAAKDMSKIRMLKGQL 120
WYKRFD++MVK GY RS YD CVY+ +L+D S++YL+LY+DDMLIAAK I+ LKG L
Sbjct: 951 WYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLL 1010
Query: 121 KGEFQMKDLGASRKILGMEIRRDRSAGKLFLSQKTYIEEL-------------------- 160
EF+MKDLGA+RKILGMEI RDR KLFLSQ++YI+++
Sbjct: 1011 SAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANI 1070
Query: 161 ------SPTTDYETEYMSRVPYANAVGSIMYVSVCTRPHISHAVSVVSRYMGRPGKGHWQ 214
+P ++ E EYMSRVPYA+AVGS+MY VCTRP ++HAVSVVSR+MG+PG+ HWQ
Sbjct: 1071 HLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQ 1130
Query: 215 AVKWILRYLGGTPELGLV 232
AVK I RYL GT ++GL+
Sbjct: 1131 AVKRIFRYLRGTSDVGLI 1148