BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0440.1
(459 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_009114429.1 PREDICTED: putative ribonuclease H protein At1g65... 144 2e-35
XP_009144061.1 PREDICTED: uncharacterized protein LOC103867715 [... 147 2e-34
GAU49616.1 hypothetical protein TSUD_99930 [Trifolium subterraneum] 147 3e-34
>XP_009114429.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 384
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 128/259 (49%), Gaps = 16/259 (6%)
Query: 6 IGNGEDTKFWDDSWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWII-PA------ 58
+GNG+ FW DSW LG L F S + + +SKV+ D W++ PA
Sbjct: 110 LGNGDKASFWFDSWCVLGPLERFFGPSGPMQTGMEIDSKVADACSDAGWLLRPARSQEAE 169
Query: 59 HLRVMLGDIANRIEEVLIDNSEVDTVVWKCNKDGV--YSMKDTYNFLRPTKETVGWASII 116
L+++L + + + DT W+ N + YS K T+ LRP + WA +
Sbjct: 170 ELQILLCSVP-----LPSHSQSPDTYSWRVNDTDMESYSTKLTWESLRPRGQKQDWAGKV 224
Query: 117 WFKDMIPRHSFIGWLVIQQRQKTKVKLLNWGLDIDPKCCLCQHGMEDELHLFTQCSYARE 176
WFK +P H+F+ W+ R T+ +L +WGL ID CC+C H E H+F +C YA +
Sbjct: 225 WFKGHVPSHTFMMWVAHLDRLPTRSRLASWGLQIDTCCCVCNHFHETRDHVFLRCEYAEQ 284
Query: 177 VWVRITQFIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAFLYHIWGERNRRMF 236
+W + +G +F W+ + WI + + L+KL V A LY +W ERN+R+
Sbjct: 285 IWKMAIRRLGYRPVLFHTWDALLAWID--MRVRHCPSTLRKLTVQAILYRLWRERNQRLH 342
Query: 237 KAKSLPAESVFWKIFNEVR 255
A P + F +I +R
Sbjct: 343 NASPTPTQVSFKEIDRLIR 361
>XP_009144061.1 PREDICTED: uncharacterized protein LOC103867715 [Brassica rapa]
Length = 1512
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 6/246 (2%)
Query: 6 IGNGEDTKFWDDSWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWIIPAHLRVMLG 65
+GNG FW D+W PLG L RF S ++ ++ VS D W++ +
Sbjct: 1238 LGNGRCISFWYDNWTPLGPLLDRFGESGPRQLSISISATVSDACNDRGWLLRGARSPLAE 1297
Query: 66 DIANRIEEVLID--NSEVDTVVWKCNKDGV--YSMKDTYNFLRPTKETVGWASIIWFKDM 121
++ + V I N DT VW N D + +S T+ +R + W IWFK
Sbjct: 1298 ELQTYLTTVPIPTLNLMDDTYVWDINGDELQEFSTSKTWEAVRNREPEQQWTQSIWFKGH 1357
Query: 122 IPRHSFIGWLVIQQRQKTKVKLLNWGLDIDPKCCLCQHGMEDELHLFTQCSYAREVWVRI 181
+PRH+F W++ Q R T+ +LL WG++I P CCLC +ED HLF C + VW +
Sbjct: 1358 VPRHAFTAWVIYQDRLPTRSRLLKWGMNISPSCCLCDAAVEDRTHLFLNCEVSEGVWNLV 1417
Query: 182 TQFIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAFLYHIWGERNRRMFKAKSL 241
+G R F W + W+ + +S LK+L+ A + +IW ERN R+ ++
Sbjct: 1418 LHRLGYSFRAFHTWTSFTEWVS--LRDTVTSRTLKRLVAQATITNIWMERNSRLHVGEAR 1475
Query: 242 PAESVF 247
++F
Sbjct: 1476 SPATIF 1481
>GAU49616.1 hypothetical protein TSUD_99930 [Trifolium subterraneum]
Length = 1213
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 181/426 (42%), Gaps = 17/426 (3%)
Query: 5 IIGNGEDTKFWDDSWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWIIPAHLRVML 64
+IGNGE+ FW+D+W + LS +FN L +SKVS I + W IP L L
Sbjct: 767 LIGNGEEVNFWNDNWCGIP-LSEQFNIPPHISHLL--SSKVSDYIFNRQWTIPFQLSQNL 823
Query: 65 GDIANRIEEV-LIDNSEVDTVVWKCNKDGVYSMKDTYNF-LRPTKETVGWASIIWFKDMI 122
++N ++++ L D ++WK DG +K+ YNF L+P ++ + WA +IW D+
Sbjct: 824 TTLSNIVQKIPLPMEPSHDKLLWKHTDDGDLQLKEAYNFNLQPLQD-LHWAKVIWTHDIP 882
Query: 123 PRHSFIGWLVIQQRQKTKVKLLNWGLDIDPKCCLCQHGMEDELHLFTQCSYAREVWVRIT 182
P S W ++ + T L+ G I C LC E HLF +C+YA +W +
Sbjct: 883 PSKSLFAWRLMHGKVPTDENLMIRGCCIPSMCNLCNSHEESSFHLFFECAYAIRLW---S 939
Query: 183 QFIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAFLYHIWGERNRRMFKAKSLP 242
F GC V W + ++I L IW RN+ + K
Sbjct: 940 WFTGCLNMVLHFTTMDDMWKLCDLNWSPQCKVTAIAVIINLLNTIWFVRNQARYNNKVTS 999
Query: 243 AESVFWKIFNEVRLKVAGAQIKVVDKPYNKQFIAKLGINATFEYPRRTICK---WKAPKP 299
S + V + G ++F +P+ I K W+ P
Sbjct: 1000 WRSAISMMI--VNTSLTGNNTCKPSSNSIREFTFLKMFRICIHHPKVPIVKEIFWQPPLV 1057
Query: 300 NYVMINIDGSLRIDRG--SYGAIIRDEQGNTIGAAVGITTPSTITYLELQGIEAGLKLAN 357
N+ NIDG+ + G S G I RD N I A ++ Y EL G +++A
Sbjct: 1058 NWFKCNIDGASCGNPGNASCGGIFRDSNANFIYAFSEPLGVASSYYAELCGAMQAIEIAF 1117
Query: 358 ALHLSRVQLNTDSMTVKSFFTTHGPKPPWHCWNIWRRILRLTTGLQELEVEHIYRESNRA 417
S + L TDS V F W N W+ +L + L + V HIYRE N
Sbjct: 1118 QKGWSNIWLETDSTLVVKAFKNPTKPVAWLLRNRWKNVLVMARSLNFI-VSHIYREDNEV 1176
Query: 418 ADMLAN 423
D+LAN
Sbjct: 1177 DDLLAN 1182