BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000051.1_g1290.1
         (126 letters)

Database: ./nr 
           95,329,361 sequences; 35,143,497,570 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KYP40203.1 Retrovirus-related Pol polyprotein from transposon TN...    75   2e-15
KYP47811.1 Retrovirus-related Pol polyprotein from transposon TN...    75   3e-15
KFK32108.1 hypothetical protein AALP_AA6G199700 [Arabis alpina]        80   3e-15

>KYP40203.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 90

 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 47  DWYMAILASRNT-HATSQRDLFYSYASDSYGSVKMGNDGLTQVVGIGDICLETRISTRLL 105
           D  M I+ S  T H T +++ F SY S  +G +KMGNDG+++V+G+GD+CL+T +  +LL
Sbjct: 14  DESMWIVDSGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQLL 73

Query: 106 LKGVKHVVPDVPFKF 120
           L+GVKH  PDV F  
Sbjct: 74  LRGVKH-APDVRFNL 87


>KYP47811.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 114

 Score = 75.1 bits (183), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 50  MAILASRNT-HATSQRDLFYSYASDSYGSVKMGNDGLTQVVGIGDICLETRISTRLLLKG 108
           M I+ S  T H T +++ F SY S ++G +KMGNDG+++V+G+GD+CL+T + T+LLLKG
Sbjct: 1   MWIVDSGTTLHVTPRKEFFTSYTSGNFGVLKMGNDGVSKVIGVGDVCLQTNMGTQLLLKG 60

Query: 109 VKHVVPDVPFK 119
           VKH  P V F 
Sbjct: 61  VKH-APYVRFN 70


>KFK32108.1 hypothetical protein AALP_AA6G199700 [Arabis alpina]
          Length = 1415

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 11/92 (11%)

Query: 25  RNCIHAISFVATVMALYSIFALDWYMAILASRNTHATSQRDLFYSYASDSYGSVKMGNDG 84
           ++ IH +  + T+   +     D    + +   THATSQRDLF +Y      SVKMGND 
Sbjct: 38  KDEIHGLWLLGTLPDSWE----DTSWVVDSGATTHATSQRDLFTTY------SVKMGNDA 87

Query: 85  LTQVVGIGDICLETRISTRLLLKGVKHVVPDV 116
           + +V GIGDICLET   TRLLLKGVKH VPD+
Sbjct: 88  IAKVAGIGDICLETSTGTRLLLKGVKH-VPDI 118

Top