BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1480.1
(436 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAP53315.2 retrotransposon protein, putative, unclassified [Oryz... 176 2e-44
AAM18736.1 putative reverse transcriptase [Oryza sativa Japonica... 176 2e-44
XP_009140270.1 PREDICTED: putative ribonuclease H protein At1g65... 175 2e-44
>AAP53315.2 retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 176 bits (446), Expect = 2e-44, Method: Composition-based stats.
Identities = 117/448 (26%), Positives = 203/448 (45%), Gaps = 36/448 (8%)
Query: 1 MQCFAIPKGICTSIESLQRTFWWG---KSKAFHTLNWSAICKPRKLGGLGFRLPFLDNQA 57
M CF + K +C I + +WW K H L+W+ + P+ +GGLGFR ++ N A
Sbjct: 1002 MGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLA 1061
Query: 58 FLNKYNWRLLNNPQAIRDQVLKGKYFPKSK--KPSHPKANHSWPWKSISKQFNQVEGLVF 115
L K WRL+ +P ++ +VL+ KYFP +P +N S+ W+SI K ++ +
Sbjct: 1062 MLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQ-TSNVSYTWRSIQKGLRVLQNGMI 1120
Query: 116 WDINKGTHINIWHDYWIPN--HPPPLINQSGSNLEWVAQLIT--NNNWNMSVINNCFNSD 171
W + G+ INIW D WIP P+ + + + V +LI W+ +++ F +
Sbjct: 1121 WRVGDGSKINIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEE 1180
Query: 172 SCISIASINLQADQEDKPTWTLTKSGNFSIKSMY------------NFLMTESAEPMQDQ 219
+I SI + + ED W G F++KS Y N S D
Sbjct: 1181 DVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDD 1240
Query: 220 NDWFFIWNMNTISRIKLFLWKCCTNSVPVKEKI-GRFIDNSYSCINCNEY-ETLDHVILH 277
+ W +W + +IK FLW+ C N++ ++ + R +D C+ C Y E H+
Sbjct: 1241 DFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFK 1300
Query: 278 CTFTKAIWFHFQVRT-----DQLTTINQWIKQWKIPNEEAHNLYAKILWFIWKDRAKPKN 332
C K +W + +Q T+ ++ E LW WK+R + K+
Sbjct: 1301 CKPVKKVWQALNLEELRSMLEQQTSGKNVLQSIYCRPENERTSAIVCLWQWWKERNEEKS 1360
Query: 333 QKS------RPPSTPFLKLNVDASFSTITEPAGIGCIIHDADANFIIAAAD-SVRCQNAE 385
++ R P F+K+N D ++S+ + G G +I D + A A + Q+A
Sbjct: 1361 PRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAF 1420
Query: 386 ECESMVIHSSMLWAIQLDINHVHIESDN 413
E + +++ A + ++ + +E+D+
Sbjct: 1421 HAEVVACAAAIKTASERGMSRIELETDS 1448
>AAM18736.1 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 176 bits (446), Expect = 2e-44, Method: Composition-based stats.
Identities = 117/448 (26%), Positives = 203/448 (45%), Gaps = 36/448 (8%)
Query: 1 MQCFAIPKGICTSIESLQRTFWWG---KSKAFHTLNWSAICKPRKLGGLGFRLPFLDNQA 57
M CF + K +C I + +WW K H L+W+ + P+ +GGLGFR ++ N A
Sbjct: 1006 MGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLA 1065
Query: 58 FLNKYNWRLLNNPQAIRDQVLKGKYFPKSK--KPSHPKANHSWPWKSISKQFNQVEGLVF 115
L K WRL+ +P ++ +VL+ KYFP +P +N S+ W+SI K ++ +
Sbjct: 1066 MLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQ-TSNVSYTWRSIQKGLRVLQNGMI 1124
Query: 116 WDINKGTHINIWHDYWIPN--HPPPLINQSGSNLEWVAQLIT--NNNWNMSVINNCFNSD 171
W + G+ INIW D WIP P+ + + + V +LI W+ +++ F +
Sbjct: 1125 WRVGDGSKINIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEE 1184
Query: 172 SCISIASINLQADQEDKPTWTLTKSGNFSIKSMY------------NFLMTESAEPMQDQ 219
+I SI + + ED W G F++KS Y N S D
Sbjct: 1185 DVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDD 1244
Query: 220 NDWFFIWNMNTISRIKLFLWKCCTNSVPVKEKI-GRFIDNSYSCINCNEY-ETLDHVILH 277
+ W +W + +IK FLW+ C N++ ++ + R +D C+ C Y E H+
Sbjct: 1245 DFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFK 1304
Query: 278 CTFTKAIWFHFQVRT-----DQLTTINQWIKQWKIPNEEAHNLYAKILWFIWKDRAKPKN 332
C K +W + +Q T+ ++ E LW WK+R + K+
Sbjct: 1305 CKPVKKVWQALNLEELRSMLEQQTSGKNVLQSIYCRPENERTSAIVCLWQWWKERNEEKS 1364
Query: 333 QKS------RPPSTPFLKLNVDASFSTITEPAGIGCIIHDADANFIIAAAD-SVRCQNAE 385
++ R P F+K+N D ++S+ + G G +I D + A A + Q+A
Sbjct: 1365 PRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAF 1424
Query: 386 ECESMVIHSSMLWAIQLDINHVHIESDN 413
E + +++ A + ++ + +E+D+
Sbjct: 1425 HAEVVACAAAIKTASERGMSRIELETDS 1452
>XP_009140270.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 866
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 214/499 (42%), Gaps = 74/499 (14%)
Query: 1 MQCFAIPKGICTSIESLQRTFWWGK---SKAFHTLNWSAICKPRKLGGLGFRLPFLDNQA 57
M F +PK +C I ++ TFWWGK SK H W+ + P+K GG+GFR N A
Sbjct: 305 MNTFKLPKSVCEEINNILATFWWGKDDGSKGMHWFAWNRMSLPKKEGGMGFRDIEKFNDA 364
Query: 58 FLNKYNWRLLNNPQAIRDQVLKGKYFPK-SKKPSHPKANHSWPWKSISKQFNQVEGLVFW 116
L K WR+L P ++ +V+KG+YFP S + +S+ W+SI + + V
Sbjct: 365 LLGKQAWRILTKPNSLMARVMKGRYFPSTSILNARETRQNSYIWRSILHGKDLLTKGVRC 424
Query: 117 DINKGTHINIWHDYWIPNHPP----PLINQSGSNLEWVAQLITNN--NWNMSVINNCFNS 170
I G I+ W D W+P +PP P+ +Q G++ V+ + WN +I N N
Sbjct: 425 VIGNGNTIDTWTDPWLPTNPPRAPVPIFDQHGNSK--VSDFMHRGLKEWNEELIRNTMNQ 482
Query: 171 DSCISIASINL-QADQEDKPTWTLTKSGNFSIKSMYNFLMTESAE------PMQDQNDWF 223
I +I L +D++D+ W K+G++++KS Y +L T + P D
Sbjct: 483 ADAEEILAIKLCSSDEDDQLVWHYNKTGDYTVKSGY-WLATHTPNNQQVIPPPGDTQLKQ 541
Query: 224 FIWNMNTISRIKLFLWKCCTNSVPVKEKI-GRFIDNSYSCINCNEYETLDHVILHCTFTK 282
IW +NT ++K F+WK T S+P+ + + R I NS C +C + ET DH+ C +
Sbjct: 542 LIWKLNTAPKVKQFMWKMITLSLPLGKNLQRRHITNSVKCPHCYQEETADHLFFDCINAQ 601
Query: 283 AIWFHFQVRTDQL--TTINQWIKQWKIPNEEA------HNLYAKILWFIWKDRAK----- 329
IW L + + K + N++A L ILW IWKDR K
Sbjct: 602 CIWRASGYPNSGLLRSQVTLEAKLSLLLNQDATIPDHLKQLPWWILWRIWKDRNKMIFQQ 661
Query: 330 ------------------------------PKNQKSRP---------PSTPFLKLNVDAS 350
P + P P F+K N D S
Sbjct: 662 KLTHWRYLLQAAYQDTKEWMEAQQFTEEVQPGQPRRSPNSKRNEWKRPEMGFVKCNYDGS 721
Query: 351 FSTITEPAGIGCIIHDADANFIIAAADSVR-CQNAEECESMVIHSSMLWAIQLDINHVHI 409
F I PA G +I D+ F A R NA E E + +M+ V
Sbjct: 722 FYNINTPAQAGWLIRDSTGLFKGAGQFKTRKPHNALESELQALLGAMMICWSQGYTKVIF 781
Query: 410 ESDNQAVIQFINGNSEGLH 428
E DN VI + ++ ++
Sbjct: 782 EGDNINVINLLKKRTKNIN 800