BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1790.1
(133 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 236 2e-70
KRY06569.1 Retrovirus-related Pol polyprotein from transposon TN... 227 4e-69
AAD17357.1 contains similarity to retrovirus-related polyprotein... 224 5e-67
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 236 bits (603), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 108/133 (81%), Positives = 119/133 (89%)
Query: 1 MKHKSESFEMFKQFQNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRNCGIVSQLTPPRT 60
MKHKS+SFE FK+FQNEV+NQ GK IKA+RSDRGGEYLSQ F DHLR CGIVSQLTPP T
Sbjct: 178 MKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGT 237
Query: 61 PQMNGVSERRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRAPSKAVEKTPYELWT 120
PQ NGVSERRNRTL+DMVRSMM+ DLP+ FWGYALET+AF LNR PSK+VEKTPYE+WT
Sbjct: 238 PQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWT 297
Query: 121 GKVPKLSFLKVWG 133
GKVP LSFLK+WG
Sbjct: 298 GKVPNLSFLKIWG 310
>KRY06569.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trichinella patagoniensis]
Length = 618
Score = 227 bits (578), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 107/133 (80%), Positives = 117/133 (87%)
Query: 1 MKHKSESFEMFKQFQNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRNCGIVSQLTPPRT 60
MKHKSE+FE FK+FQ+EVENQ +KIK +RSDRGGE+LS EF HLR CGIVSQLTPP T
Sbjct: 1 MKHKSETFEKFKEFQSEVENQRDRKIKFLRSDRGGEHLSHEFGAHLRKCGIVSQLTPPGT 60
Query: 61 PQMNGVSERRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRAPSKAVEKTPYELWT 120
PQ NGVSE RNRTL+DMVRSMM+L DLP +FWGYALETAAFTLNRAPSK+VE TPYELW
Sbjct: 61 PQRNGVSEHRNRTLLDMVRSMMSLTDLPLSFWGYALETAAFTLNRAPSKSVETTPYELWF 120
Query: 121 GKVPKLSFLKVWG 133
GK PKLSFLKVWG
Sbjct: 121 GKKPKLSFLKVWG 133
>AAD17357.1 contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] CAB77943.1 putative transposon protein
[Arabidopsis thaliana]
Length = 769
Score = 224 bits (572), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 116/133 (87%)
Query: 1 MKHKSESFEMFKQFQNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRNCGIVSQLTPPRT 60
MKHK ESFE K+FQNEV+N+LGK IKA+RSDRGGEYLSQ F DHLR CGIVSQLTPP T
Sbjct: 210 MKHKLESFEKSKEFQNEVKNKLGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGT 269
Query: 61 PQMNGVSERRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRAPSKAVEKTPYELWT 120
PQ NGVSERRN+TL+DMVRSMM+ DLP++FWGYALET F LNR PSK+VEKTPYE+WT
Sbjct: 270 PQGNGVSERRNQTLLDMVRSMMSHTDLPSSFWGYALETYVFMLNRCPSKSVEKTPYEIWT 329
Query: 121 GKVPKLSFLKVWG 133
GKVP LSFLK+ G
Sbjct: 330 GKVPNLSFLKILG 342