BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1800.1
(222 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 207 3e-58
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 206 6e-58
ABA97705.1 retrotransposon protein, putative, Ty1-copia subclass... 204 6e-58
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 207 bits (528), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 144/223 (64%), Gaps = 29/223 (13%)
Query: 1 LQGDKLAPRSDKCLFVGYPKETNGYYFYNPSENKVFVARDGVFLQKEFLSKKTSGRNIEI 60
LQ DKL P+SDKC VGYPKET GYYFYN + KVFVAR GVFL+KEFLS++ SG + +
Sbjct: 674 LQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHL 733
Query: 61 EEVRSEQQTDTVVPMSELAIPNYPELIEKGTEEEMVDLRDPPAQSECDSQENPQGVGSVS 120
EEV Q+T PE + TE P Q D P V + +
Sbjct: 734 EEV---QET--------------PETVSATTE---------PQQE--DQSVAPPVVDTPA 765
Query: 121 PV-VQASRRSTRLIELSQRQEILLIEDNEPNTYKEAMTSPDSEKWLGAMKSEMESMSENQ 179
P + SRR+ +++++ILL++++EP TY+EAM DS KWLGAMKSE+ESM +NQ
Sbjct: 766 PRRSERSRRAPDRYTGAEQRDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQ 825
Query: 180 VWNLVDLPDEVEPIGCKWIFKMKTDRDGNVSVFKARLVAKGYR 222
VWNLVD PD V+ I CKW+FK K D DGNV ++KARLVAKG++
Sbjct: 826 VWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFK 868
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 206 bits (524), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 144/230 (62%), Gaps = 40/230 (17%)
Query: 1 LQGDKLAPRSDKCLFVGYPKETNGYYFYNPSENKVFVARDGVFLQKEFLSKKTSGRNIEI 60
L DKL P+SDKC FVGYPKET GYYFY+P++NKVFV R+G FL++EFLSK TSG + +
Sbjct: 318 LITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAFLEREFLSKGTSGSKVLL 377
Query: 61 EEVRSEQQTDTVVPMSELAIPNYPELIEKGTEEEMVDLR---DPPAQSECDSQENPQGVG 117
EEVR E Q D VP S+ EE +DLR +P
Sbjct: 378 EEVR-EPQGD--VPTSQ--------------EEHQLDLRRVVEPIL-------------- 406
Query: 118 SVSPVVQASRRSTRLIE-----LSQRQEILLIEDNEPNTYKEAMTSPDSEKWLGAMKSEM 172
V P V+ S RS + + + +IE +EP +Y+EA+ PDS+KWL A KSEM
Sbjct: 407 -VEPEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAAKSEM 465
Query: 173 ESMSENQVWNLVDLPDEVEPIGCKWIFKMKTDRDGNVSVFKARLVAKGYR 222
ESMS+N+VW LVDLPD V+PI CKWIFK K D DGN+ ++KA LVAKGY+
Sbjct: 466 ESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYK 515
>ABA97705.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 204 bits (520), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 142/231 (61%), Gaps = 35/231 (15%)
Query: 1 LQGDKLAPRSDKCLFVGYPKETNGYYFYNPSENKVFVARDGVFLQKEFLSKKTSGRNIEI 60
LQ DKL P+SDKC FVGY KET GYYFYN E KVFVAR GVFL+KEF+S+K SG + +
Sbjct: 370 LQSDKLTPKSDKCFFVGYHKETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRL 429
Query: 61 EEVRSEQQTDTVVPMSELAIPNYPELIEKGTEEEMVDLRDPPAQSECDSQENPQGVGSVS 120
EE+ Q+T PE T+ P + Q+ Q V
Sbjct: 430 EEI---QET--------------PENASTSTQ--------PQQAEQDVVQQVEQVVVEPV 464
Query: 121 PVVQASRRSTR---------LIELSQRQEILLIEDNEPNTYKEAMTSPDSEKWLGAMKSE 171
ASRRS R L+ QR +ILL++++EP Y+EAM PDSEKWLGAMKS+
Sbjct: 465 VEALASRRSKRIRRTPARYALLTTGQR-DILLLDNDEPTIYEEAMVGPDSEKWLGAMKSK 523
Query: 172 MESMSENQVWNLVDLPDEVEPIGCKWIFKMKTDRDGNVSVFKARLVAKGYR 222
+ESM NQVWNLVD PD V+ I CKW+FK TD DGNV ++KARLVAKG+R
Sbjct: 524 IESMHVNQVWNLVDPPDGVKAIKCKWVFKKNTDVDGNVHIYKARLVAKGFR 574