BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1810.1
(185 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN65627.1 hypothetical protein VITISV_032735 [Vitis vinifera] 220 3e-63
ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass... 216 5e-62
ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass... 214 1e-61
>CAN65627.1 hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 220 bits (560), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 142/230 (61%), Gaps = 45/230 (19%)
Query: 1 MLKSIRIILAIATHYDYEIWQMDVKTAFLNGKLEEDVYMTQPEGFEDSKNAGKVCKLQR- 59
MLKSIRI+L+IA ++DYEIWQMDVKTAFLNG L+E +YM Q EGF + +CKL R
Sbjct: 877 MLKSIRILLSIAAYFDYEIWQMDVKTAFLNGSLDECIYMKQLEGFITNGQEHLLCKLNRS 936
Query: 60 -------------------------KC-------------------FSMKDLGDAEYILG 75
+C F MK LG+A +ILG
Sbjct: 937 IYGLKQASRSWNTCFDQTIKTFGFDQCHDVSCVYKKWNGKKVVFLRFDMKYLGEAAHILG 996
Query: 76 IKIYIDRSRKMIGLNQETYIDKVLGRFKMEDSKRGFLPMTHSTTRSKTQCPRDPDELAYM 135
IK+ +R ++MIGL+Q YID +L RF M+ SK+GFLP H SK Q P+ P+E+ M
Sbjct: 997 IKLMRNRKKRMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIVLSKDQSPKTPEEIESM 1056
Query: 136 KKVPYASAIGSIMYAMVCTRPDVSYALSMCSRYQSNPGEKHWTAAKKILK 185
K VPYASA+GS+MYAM+CTRPD+ +A+ M SR+QSNPG +HWTA K I+K
Sbjct: 1057 KAVPYASAVGSLMYAMLCTRPDIYFAVGMVSRFQSNPGREHWTAVKHIIK 1106
>ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 216 bits (550), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 143/242 (59%), Gaps = 57/242 (23%)
Query: 1 MLKSIRIILAIATHYDYEIWQMDVKTAFLNG------------------------KLEED 36
MLKSI+I+LAI ++DYEIWQMDVKTAF+NG KL++
Sbjct: 632 MLKSIQIVLAITAYFDYEIWQMDVKTAFVNGNIDEDVYMTQLKGFVDPQSAKKICKLQKS 691
Query: 37 VYMTQPEG------FEDSKNAGKVCKLQR---------------------------KCFS 63
+Y + F++ A + K ++ FS
Sbjct: 692 IYGLKQASRSWNIRFDEVVKAWALSKTKKSLVLYVDDILLIGNDIPMLESVKTSLKNSFS 751
Query: 64 MKDLGDAEYILGIKIYIDRSRKMIGLNQETYIDKVLGRFKMEDSKRGFLPMTHSTTRSKT 123
MKDLG+A YILGI+IY DRS+++IGL+Q TYIDKVL RF M+DSK+GFLPM+H K
Sbjct: 752 MKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKN 811
Query: 124 QCPRDPDELAYMKKVPYASAIGSIMYAMVCTRPDVSYALSMCSRYQSNPGEKHWTAAKKI 183
QCP+ DE M +PYASAIGSIMYAM+CT PDVSYALS SRYQS+PGE HW A K I
Sbjct: 812 QCPQTTDERNKMSVIPYASAIGSIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNI 871
Query: 184 LK 185
LK
Sbjct: 872 LK 873
>ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 214 bits (545), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/202 (56%), Positives = 137/202 (67%), Gaps = 20/202 (9%)
Query: 1 MLKSIRIILAIATHYDYEIWQMDVKTAFLNGKLEED--VY---------------MTQPE 43
MLKSIRIILAI ++DYEIWQMDVKTAFLN L+ED +Y + +
Sbjct: 565 MLKSIRIILAIPAYFDYEIWQMDVKTAFLNENLDEDKSIYGLKQASRSWNIRFDEVVKAL 624
Query: 44 GFEDSKNAGKVCKLQRKCFSMKDLGDAEYILGIKIYIDRSRKMIGLNQETYIDKVLGRFK 103
GF KN + C ++ S DL +A YIL I+IY DRSR++IG +Q TYIDKVL RF
Sbjct: 625 GF--VKNEEEPCVYKKISGSALDLREAAYILSIRIYRDRSRRLIG-SQSTYIDKVLKRFN 681
Query: 104 MEDSKRGFLPMTHSTTRSKTQCPRDPDELAYMKKVPYASAIGSIMYAMVCTRPDVSYALS 163
M+DSK+GFLP++H K QCP+ DE M +PYASAIGSIMYAM+CTRPDV YALS
Sbjct: 682 MQDSKKGFLPLSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVPYALS 741
Query: 164 MCSRYQSNPGEKHWTAAKKILK 185
S+YQS+PGE HW A K ILK
Sbjct: 742 ATSQYQSDPGESHWIAVKNILK 763