BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1840.1
(386 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 509 e-167
AAT44257.1 putative polyprotein [Oryza sativa Japonica Group] 498 e-163
AAR87163.1 putative polyprotein [Oryza sativa Japonica Group] AA... 491 e-160
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 509 bits (1312), Expect = e-167, Method: Compositional matrix adjust.
Identities = 248/420 (59%), Positives = 306/420 (72%), Gaps = 37/420 (8%)
Query: 1 MVALYDMELEQLDAKTAFLHGELEEQIYMRQPEGFEILGREDQVCLLKKSLYGLKQSPRQ 60
+VA ++ELEQLD KTAFLHGELEE+IYM QP+GF++ G+E+ VC LKKSLYGLKQSPRQ
Sbjct: 891 IVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQ 950
Query: 61 WYKCFDTFMVKNGYDRSRYDSCVYHMKLSDGSSVYLLLYVDDMLIASKDMSEIHMLKDQL 120
WYK FD++MVK GY RS YD CVY+ +L+D S +YL+LYVDDMLIA+K +I LK L
Sbjct: 951 WYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLL 1010
Query: 121 KGEFEIKDLGASRKILGMEIRRDKSARKLFLSQKTYIEKVLERFGMTEAKPVGTPLAAHF 180
EFE+KDLGA+RKILGMEI RD+ RKLFLSQ++YI+KVL RFGM+ +KP+ TP AA+
Sbjct: 1011 SAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANI 1070
Query: 181 KLSGELSPTTDDETEYMSRVPYANAVGSIMYAMVCTRPDISHVVSVVSRYMGRLGRGHWQ 240
L+ +P +++E EYMSRVPYA+AVGS+MYAMVCTRPD++H VSVVSR+MG+ GR HWQ
Sbjct: 1071 HLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQ 1130
Query: 241 AVKWILR----------------------------------KRSLTGYTFTLCGSAISWR 266
AVK I R +RS+TGY FTL GS +SW+
Sbjct: 1131 AVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWK 1190
Query: 267 AVLQSVLALSTAEAEYMAATEAVKEAIWLSGLVRDLGLKQEVTEVYCDNQSAIHLTKNQM 326
A LQ + LST EAEYMA TEA KE IWL GLV DLGL + VYCD+ SAI L K+Q+
Sbjct: 1191 ATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQV 1250
Query: 327 YHERTKHIDVRYHFIKDVVEQGKITMKKVSTVENPADMLTKAITTFKFKHCLDLIGISRC 386
+HERTKHIDVRYHF++ + +I +KKV T +NPADM TK + KF+HCLDL+ I C
Sbjct: 1251 HHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNIRSC 1307
>AAT44257.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 498 bits (1282), Expect = e-163, Method: Compositional matrix adjust.
Identities = 244/417 (58%), Positives = 303/417 (72%), Gaps = 34/417 (8%)
Query: 1 MVALYDMELEQLDAKTAFLHGELEEQIYMRQPEGFEILGREDQVCLLKKSLYGLKQSPRQ 60
+VA++D ELEQ+D KTAFLHGELEE IYM QPEGF + G+E+ V LKKSLYGLKQSPRQ
Sbjct: 795 IVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQ 854
Query: 61 WYKCFDTFMVKNGYDRSRYDSCVYHMKLSDGSSVYLLLYVDDMLIASKDMSEIHMLKDQL 120
WYK FD+FM + RS YDSCVY +K+ DGSS+YLLLYVDDMLIA+KD SEI LK QL
Sbjct: 855 WYKRFDSFMFSQKFRRSNYDSCVY-LKVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQL 913
Query: 121 KGEFEIKDLGASRKILGMEIRRDKSARKLFLSQKTYIEKVLERFGMTEAKPVGTPLAAHF 180
EFE+KDLGA++KILGMEI R++ + KL+LSQK YIEKVL RF M +AKPV TPLAAHF
Sbjct: 914 SSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHF 973
Query: 181 KLSGELSPTTDDETEYMSRVPYANAVGSIMYAMVCTRPDISHVVSVVSRYMGRLGRGHWQ 240
+LS +L P +D + EYMSRVPY + VGS+MYAMVC+R D+SH +SVVSRYM G+ HW+
Sbjct: 974 RLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWK 1033
Query: 241 AVKWIL---------------------------------RKRSLTGYTFTLCGSAISWRA 267
V+WI R+RSLTGY FT+ G A+SW+A
Sbjct: 1034 VVQWIFKYLRGTSSACLQFGRSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKA 1093
Query: 268 VLQSVLALSTAEAEYMAATEAVKEAIWLSGLVRDLGLKQEVTEVYCDNQSAIHLTKNQMY 327
LQ+ +ALST E EYMA +EA KEAIWL GL +L ++CD+QSAI TK+QM+
Sbjct: 1094 SLQATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTKDQMF 1153
Query: 328 HERTKHIDVRYHFIKDVVEQGKITMKKVSTVENPADMLTKAITTFKFKHCLDLIGIS 384
HERTKHIDVRYHFI+ V+ +G + + K+ST +NPADM+TK + T KF+ C L+G++
Sbjct: 1154 HERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFELCSSLVGVT 1210
>AAR87163.1 putative polyprotein [Oryza sativa Japonica Group] AAU89150.1
integrase core domain containing protein [Oryza sativa
Japonica Group] ABF98081.1 retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 491 bits (1264), Expect = e-160, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 304/416 (73%), Gaps = 34/416 (8%)
Query: 1 MVALYDMELEQLDAKTAFLHGELEEQIYMRQPEGFEILGREDQVCLLKKSLYGLKQSPRQ 60
+V ++D+ELEQLD KT FLHGELEE+IYM QPEGF + G+ED VC LK+SLYGLKQSPRQ
Sbjct: 906 IVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQ 965
Query: 61 WYKCFDTFMVKNGYDRSRYDSCVYHMKLSDGSSVYLLLYVDDMLIASKDMSEIHMLKDQL 120
WYK FD+FM+ +G+ RS +DSCVY +K +GS +YLLLYVDDMLIA+K +I LK QL
Sbjct: 966 WYKRFDSFMLSHGFKRSEFDSCVY-IKFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQL 1024
Query: 121 KGEFEIKDLGASRKILGMEIRRDKSARKLFLSQKTYIEKVLERFGMTEAKPVGTPLAAHF 180
EF++KDLGA++KILGMEI RD+++ LFLSQ++YI+KVL+RF M +AKPV TP+A HF
Sbjct: 1025 SSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHF 1084
Query: 181 KLSGELSPTTDDETEYMSRVPYANAVGSIMYAMVCTRPDISHVVSVVSRYMGRLGRGHWQ 240
KLS +TD++ EYMSRVPY++AVGS+MYAMVC+ PD+SH +S+VSRYM G+ HW+
Sbjct: 1085 KLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWK 1144
Query: 241 AVKWILR---------------------------------KRSLTGYTFTLCGSAISWRA 267
AV+WI R +RSLTGY FT+ A+SW+A
Sbjct: 1145 AVQWIFRYLRGTADACLKFGRIDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKA 1204
Query: 268 VLQSVLALSTAEAEYMAATEAVKEAIWLSGLVRDLGLKQEVTEVYCDNQSAIHLTKNQMY 327
LQ V+A ST EAEYMA EA KE++WL GL +L ++CD+QSAI LTK+QM+
Sbjct: 1205 TLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMF 1264
Query: 328 HERTKHIDVRYHFIKDVVEQGKITMKKVSTVENPADMLTKAITTFKFKHCLDLIGI 383
HERTKHID++YH+++D+V QGK+ + K+S +NPADM+TK I KF+ C L+GI
Sbjct: 1265 HERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLVGI 1320