BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1930.1
(87 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAD40471.2 OSJNBa0067G20.17 [Oryza sativa Japonica Group] 70 1e-12
CAE03845.1 OSJNBb0089K06.4 [Oryza sativa Japonica Group] 69 8e-12
ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass... 69 1e-11
>CAD40471.2 OSJNBa0067G20.17 [Oryza sativa Japonica Group]
Length = 276
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 2 TKKNFNFRSLLEKEKLNEHNFLDWERNLGIVLRMEGKQNVLETPIP--ILDATSTLEEKE 59
T +FN RS+LEKEKLN NF+DW RNL IVLR E K+ VLE P P + + + +E
Sbjct: 7 TSSSFNLRSILEKEKLNGTNFVDWYRNLRIVLRQEHKEFVLEEPFPTDLPNNATAARRRE 66
Query: 60 HEESVRKRAEPVTCLMLATWNQLFK 84
HE+ + + ++CLML T + F+
Sbjct: 67 HEKRCNEYLD-ISCLMLVTISPEFQ 90
>CAE03845.1 OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 2 TKKNFNFRSLLEKEKLNEHNFLDWERNLGIVLRMEGKQNVLETPIPILDATSTLEE--KE 59
T NFN RS+LEKEKL NF+DW RNL IVLR E K+ VL P P+ + + +E
Sbjct: 5 TPSNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTQPFPVDLPNNAIAAQCRE 64
Query: 60 HEESVRKRAEPVTCLMLAT 78
HE + + ++CLMLAT
Sbjct: 65 HERRCNEYHD-ISCLMLAT 82
>ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza
sativa Japonica Group]
Length = 932
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 5 NFNFRSLLEKEKLNEHNFLDWERNLGIVLRMEGKQNVLETPIP--ILDATSTLEEKEHEE 62
+FN RS+LEKEKL NF+DW RNL IVLR E K+ VL P P + + S + +EHE+
Sbjct: 8 SFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNASAAQRREHEK 67
Query: 63 SVRKRAEPVTCLMLAT 78
+ ++CLMLAT
Sbjct: 68 RCNDYLD-ISCLMLAT 82