BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g2080.1
(311 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAM74253.1 Putative retroelement [Oryza sativa Japonica Group] A... 443 e-144
GAU10196.1 hypothetical protein TSUD_418680, partial [Trifolium ... 435 e-143
GAU51348.1 hypothetical protein TSUD_412960 [Trifolium subterran... 443 e-142
>AAM74253.1 Putative retroelement [Oryza sativa Japonica Group] AAP52347.1
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1140
Score = 443 bits (1140), Expect = e-144, Method: Compositional matrix adjust.
Identities = 207/315 (65%), Positives = 253/315 (80%), Gaps = 5/315 (1%)
Query: 2 RLCINYRELNKVTVKNKYPLPRIDDLFDQLRGTKWFSKITLRSGYHQLRVREEDILKTAS 61
R+C++YR LN+VT+KNKYPLPRIDDLFDQL G FSKI LRSGYHQLR+REEDI KTA
Sbjct: 457 RMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAF 516
Query: 62 VTRYGSYEFLVMSFGLANAPAVFMDLMNRVCRDLLDKFVIIFIDDIIIYSKTKEDHEDHL 121
TRYG +E VMSFGL NAPA FM+LMN+V + LDKFV++FIDDI+IYSKTKE+HE+HL
Sbjct: 517 TTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHL 576
Query: 122 RLV-----VLVDPSKAEVVLYWKQPTSVTEIRGFVVLVGYYLQFIKGFSSIAGPLTNLTK 176
RL V VDPS E VL WKQP +V+EIR F+ L GYY +FI+ FS IA P+T L +
Sbjct: 577 RLALEKLRVAVDPSNVESVLSWKQPKTVSEIRSFLGLAGYYCRFIENFSKIARPMTRLLQ 636
Query: 177 KGVVFSWDTKCDEAWKELKTKLTTAPVLVIPESATRFVIYTDASIQGLGCVLMQKDKVVA 236
K V + W C+ +++ELK +L TAPVL++P+S F +Y DAS GLGCVLMQ+ KVVA
Sbjct: 637 KEVKYKWTEDCERSFQELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVA 696
Query: 237 YASRQLRPHEQNHPTHDLELAAIVFALKIWRHYLYGEKFDLFTDHKSLKYLFSQKELNMR 296
YASRQLRPHE N+PTHDLELAA+V ALKIWRHYL+G + +++TDHKSLKY+F+Q +LNMR
Sbjct: 697 YASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEMYTDHKSLKYIFTQPDLNMR 756
Query: 297 QRRWLELMKDYNFTL 311
QRRWLEL+KDY+ +
Sbjct: 757 QRRWLELIKDYDMEI 771
>GAU10196.1 hypothetical protein TSUD_418680, partial [Trifolium subterraneum]
Length = 885
Score = 435 bits (1118), Expect = e-143, Method: Compositional matrix adjust.
Identities = 210/345 (60%), Positives = 256/345 (74%), Gaps = 34/345 (9%)
Query: 1 MRLCINYRELNKVTVKNKYPLPRIDDLFDQLRGTKWFSKITLRSGYHQLRVREEDILKTA 60
MRLCI+YR+LNKVT+KNKY LPRIDDL DQLRG FSKI LRSGYHQ+R+R D+ KTA
Sbjct: 258 MRLCIDYRQLNKVTIKNKYLLPRIDDLLDQLRGATIFSKIDLRSGYHQIRIRTSDVSKTA 317
Query: 61 SVTRYGSYEFLVMSFGLANAPAVFMDLMNRVCRDLLDKFVIIFIDDIIIYSKTKEDHEDH 120
TRYG YEFLVM FGL NAPAVFMD MNR+ + LDKFV+IFIDDI+IYS+ ++H +H
Sbjct: 318 FRTRYGHYEFLVMPFGLTNAPAVFMDYMNRIFQPYLDKFVVIFIDDILIYSRDPQEHAEH 377
Query: 121 LRLV----------------------------------VLVDPSKAEVVLYWKQPTSVTE 146
LR+V V VDPSK E VL W++P +V+E
Sbjct: 378 LRIVLNILREKQLYAKFSKCEFWLSEVKFLGHVISQGGVSVDPSKVEAVLNWERPRTVSE 437
Query: 147 IRGFVVLVGYYLQFIKGFSSIAGPLTNLTKKGVVFSWDTKCDEAWKELKTKLTTAPVLVI 206
IR F+ L GYY +FI GFS IA PLT LT+KG F W+ C+ ++ LK KLT+APVLVI
Sbjct: 438 IRSFLGLAGYYRRFILGFSEIALPLTRLTRKGAAFVWNELCENSFNLLKQKLTSAPVLVI 497
Query: 207 PESATRFVIYTDASIQGLGCVLMQKDKVVAYASRQLRPHEQNHPTHDLELAAIVFALKIW 266
P+ ++V+Y DAS +GLGCVLMQ+ VVAYASRQL+PHE+N+PTHDLELAAI+FALKIW
Sbjct: 498 PDPDKKYVVYCDASNKGLGCVLMQEGAVVAYASRQLKPHEENYPTHDLELAAIIFALKIW 557
Query: 267 RHYLYGEKFDLFTDHKSLKYLFSQKELNMRQRRWLELMKDYNFTL 311
RHYLYG +F L++DHKSL+YLF QKEL+MRQRRW+E +KD++F L
Sbjct: 558 RHYLYGVQFALYSDHKSLRYLFDQKELSMRQRRWMEYLKDFDFEL 602
>GAU51348.1 hypothetical protein TSUD_412960 [Trifolium subterraneum]
Length = 1345
Score = 443 bits (1140), Expect = e-142, Method: Compositional matrix adjust.
Identities = 210/320 (65%), Positives = 253/320 (79%), Gaps = 9/320 (2%)
Query: 1 MRLCINYRELNKVTVKNKYPLPRIDDLFDQLRGTKWFSKITLRSGYHQLRVREEDILKTA 60
MRLCI+YR+LNKVT+KNKYPLPRIDDL DQLRG FSKI LR GYHQ+R+R D+ KTA
Sbjct: 566 MRLCIDYRQLNKVTIKNKYPLPRIDDLLDQLRGATIFSKIDLRFGYHQIRIRTSDVSKTA 625
Query: 61 SVTRYGSYEFLVMSFGLANAPAVFMDLMNRVCRDLLDKFVIIFIDDIIIYSKTKEDHEDH 120
TRYG YEFLVM FGL NAPAVFMD MNR+ + LDKFV+IFIDDI+IYSK +H +H
Sbjct: 626 FRTRYGHYEFLVMPFGLTNAPAVFMDYMNRIFQPYLDKFVVIFIDDILIYSKDPREHAEH 685
Query: 121 LRLV---------VLVDPSKAEVVLYWKQPTSVTEIRGFVVLVGYYLQFIKGFSSIAGPL 171
LR+ V VDPSK E VL W++P +V+EIR F+ L GYY +FI GFS IA PL
Sbjct: 686 LRIFLGHVISQGGVSVDPSKVEAVLNWERPRTVSEIRSFLGLAGYYRRFILGFSEIALPL 745
Query: 172 TNLTKKGVVFSWDTKCDEAWKELKTKLTTAPVLVIPESATRFVIYTDASIQGLGCVLMQK 231
T LT+KG F WD C+ ++ LK KLT+APVLVIP+ ++V+Y DAS +GLGCVLMQ+
Sbjct: 746 TRLTRKGAAFVWDELCENSFNLLKQKLTSAPVLVIPDPDKQYVVYCDASNKGLGCVLMQE 805
Query: 232 DKVVAYASRQLRPHEQNHPTHDLELAAIVFALKIWRHYLYGEKFDLFTDHKSLKYLFSQK 291
VVAYASRQL+PHE+N+PTHDLELAAI+F LKIWRH+LYG +F L++DHKSL+YLF QK
Sbjct: 806 GAVVAYASRQLKPHEENYPTHDLELAAIIFVLKIWRHHLYGVQFALYSDHKSLRYLFDQK 865
Query: 292 ELNMRQRRWLELMKDYNFTL 311
ELNMRQRRW+E +KD++F L
Sbjct: 866 ELNMRQRRWMEYLKDFDFEL 885