BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g2330.1
(287 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP38864.1 Retrovirus-related Pol polyprotein from transposon TN... 298 5e-95
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 309 1e-94
KYP50611.1 Retrovirus-related Pol polyprotein from transposon TN... 294 2e-94
>KYP38864.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 507
Score = 298 bits (762), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 125/232 (53%), Positives = 172/232 (74%)
Query: 1 MGFCEHCVFGKAHRVTFSTSKHRSKEVLDYVHTDVWGPTKLPSKGGSRYFVTFVDDHSRF 60
+ FCEHCVFGK HR+ F ++H +K LDY+H+D WGP+++PS GG RYF++ +DD+SR
Sbjct: 76 LRFCEHCVFGKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRM 135
Query: 61 VWLYFLKHKNEVFNTFLVWKAMVEKKTGRKLKTLRSDNGTEYTDGAFKEFCNQEGIVRHW 120
W++ KHKN+ F F WK ++EK+T +++K LR+DNG E+ F ++C EGI R +
Sbjct: 136 TWIFITKHKNQAFKCFKEWKILMEKQTSKRVKRLRTDNGLEFCSKEFNDYCKAEGIARQY 195
Query: 121 TVVNTPQQNGVAERLNRKLLEKARCMRSNSGLGVEWWAESVATACYIVNRSPHSSLDGGI 180
TV NTPQQNGVAER+NR LLE+ARC+ SN+GL +WAE+V+T CY++NRSP + +D
Sbjct: 196 TVRNTPQQNGVAERMNRTLLERARCLLSNAGLSRSFWAEAVSTTCYLINRSPSTIIDCKT 255
Query: 181 PYEVWSGEHADYERLKVFSCTAYYHVKGNKLDNRAKKAIFLGYATGVKGYRL 232
P EVWS + A+Y L+VF C AYYHV KL+ R+KK +F+GY GVKGYR+
Sbjct: 256 PIEVWSNKPANYSLLRVFGCNAYYHVNEGKLEPRSKKGLFMGYGDGVKGYRI 307
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 309 bits (792), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 141/234 (60%), Positives = 174/234 (74%), Gaps = 2/234 (0%)
Query: 1 MGFCEHCVFGKAHRVTFSTSKHRSKEVLDYVHTDVWGPTKLPSKGGSRYFVTFVDDHSRF 60
+ FCEHCVFGK RV+FST+ HR+K LDY+H+D+WGP+K+PS GG RY +T +DD SR
Sbjct: 154 LEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRK 213
Query: 61 VWLYFLKHKNEVFNTFLVWKAMVEKKTGRKLKTLRSDNGTEYTDGAFKEFCNQEGIVRHW 120
VW+YFL+HKNE F TF WK +VE +TG+K+K LR+DNG E+ +G F EFC GI RH
Sbjct: 214 VWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHK 273
Query: 121 TVVNTPQQNGVAERLNRKLLEKARCMRSNSGL--GVEWWAESVATACYIVNRSPHSSLDG 178
T+ PQQNGVAERLNR +LE+ARCM SN+GL E W E+ +TACY++NRSPHSSL+
Sbjct: 274 TIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLINRSPHSSLNF 333
Query: 179 GIPYEVWSGEHADYERLKVFSCTAYYHVKGNKLDNRAKKAIFLGYATGVKGYRL 232
IP E+WSG DY L++F C AY HV KL RA K IFLGYA+ KGYRL
Sbjct: 334 KIPEEIWSGNPIDYSNLRIFGCPAYAHVNDGKLAPRAIKCIFLGYASESKGYRL 387
>KYP50611.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 448
Score = 294 bits (753), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 170/230 (73%)
Query: 3 FCEHCVFGKAHRVTFSTSKHRSKEVLDYVHTDVWGPTKLPSKGGSRYFVTFVDDHSRFVW 62
FCEHCVFGK HR+ F ++H +K LDY+H+D WGP+++PS GG RYF++ +DD+SR W
Sbjct: 219 FCEHCVFGKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTW 278
Query: 63 LYFLKHKNEVFNTFLVWKAMVEKKTGRKLKTLRSDNGTEYTDGAFKEFCNQEGIVRHWTV 122
++ KHKN+ F F WK ++EK+ +++K LR+DNG E+ F +FC EGI R +TV
Sbjct: 279 IFITKHKNQAFKCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFNDFCKAEGIARQYTV 338
Query: 123 VNTPQQNGVAERLNRKLLEKARCMRSNSGLGVEWWAESVATACYIVNRSPHSSLDGGIPY 182
NTPQQNGVAER+N+ LLE+ARC+ SN+GL +WAE+++T CY++NRSP + +D P
Sbjct: 339 RNTPQQNGVAERMNKTLLERARCLLSNAGLSRSFWAEAISTTCYLINRSPSTVIDCKTPI 398
Query: 183 EVWSGEHADYERLKVFSCTAYYHVKGNKLDNRAKKAIFLGYATGVKGYRL 232
EVWS + A+Y L+VF C AYYHV KL+ R+KK +F+GY GVKGYR+
Sbjct: 399 EVWSNKPANYSLLRVFGCNAYYHVNEGKLEPRSKKGLFMGYGDGVKGYRI 448