BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0340.1
(731 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAP94600.1 putative copia-like retrotransposon Hopscotch polypro... 308 8e-89
AAL66754.1 putative copia-like retrotransposon Hopscotch polypro... 309 2e-87
ABA98286.2 retrotransposon protein, putative, Ty1-copia subclass... 304 3e-85
>AAP94600.1 putative copia-like retrotransposon Hopscotch polyprotein, partial
[Zea mays]
Length = 969
Score = 308 bits (790), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 184/545 (33%), Positives = 268/545 (49%), Gaps = 58/545 (10%)
Query: 1 MNIKLQLQTSKKGTLSVSEYLLRLKTLSDSLATIGHPAADDELVLIVLAGLGPEYESFVT 60
+N++L L T+KKG+++V+EY ++K D +A G P D+E+V +L GL E+ V+
Sbjct: 97 VNLRLALSTTKKGSMTVAEYYTKMKGYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVS 156
Query: 61 SITTRTIPPSSSELHSLLLTHEFRLQFVSNSSPNPTALFTQTPSPNPSSSPPFSRSYNPT 120
++ TR P S +L+S LL E +L + + S
Sbjct: 157 ALVTRVDPISLEDLYSQLLNFETKLDLMRGGGEQHQGSANMAGRGGRGNQRGGSGGRGQR 216
Query: 121 QNFNRGYRGRSYYRGGGRGRHSNRGGYPRQSVLGPPPSRQPIICQYCGKYGHSARQCYSL 180
GR+ + GG R SN+GGY R+S S + +CQ C K GH+A +C+
Sbjct: 217 GGRGSSRGGRASWSGG---RQSNQGGYIRRS---NNSSDERPVCQVCFKKGHTAARCW-- 268
Query: 181 NRTTEL---NQSFAALGIDSIAADPHWYMDPGATSHIASDAASQISRSDAPTPESVMVGN 237
+R E ++ A +S D +WY D GAT HI + R + + +
Sbjct: 269 HRFEEDFVPDEKLAGAATNSYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTAS 328
Query: 238 GNTTSVSGVGKFLLPFSNIILHNTLVVPSFKKNLISLSKLLVDLNCVAIFHRKCFLVQDL 297
G+ D + FH F+++D
Sbjct: 329 GS----------------------------------------DNSAFIEFHPNFFVIKDK 348
Query: 298 ATGKTILVGTMSDGLFRVSSPSICSPPINLFAHS-STWFSHLLR----CLASSSCTLFNH 352
T +L G GL+ + + S + S S W + L + +F
Sbjct: 349 DTKNILLKGRCHKGLYPIPATSTIKNALGAVKPSMSRWHNRLGHPSSFIVRQYKSEVFQK 408
Query: 353 FKNFKQLVENQFSKPIQIFQTDGGGEYISNEFSSFLTQNGILHRITCPHTPQQNGVAERK 412
F F+ LVE F + I QTD GGEY ++F + GI H ++CPH QQNG AERK
Sbjct: 409 FHEFQSLVERLFDRKILAVQTDWGGEY--QRLNTFFNKIGISHLVSCPHAHQQNGSAERK 466
Query: 413 IRHLVETALCLLHQSSAPLTFWPDAFQNAIFTINQLPSSVHKGISPFEKLFHKKPDYTYL 472
RH+VE L LL +S PL FW +AF A + IN+ P+ + +PFE+LFHK+PDY+ L
Sbjct: 467 HRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVL 526
Query: 473 RSFGCLCFPLLTPYRSSKLDFKSKPCVFLGYSFNHKGYRCLDITSSRIYISRNVVFDESK 532
R FGC+C+P L PY S KL F+SK CVFLGYS HKG++CLD+++ R+Y+SR+V FDE+
Sbjct: 527 RIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENF 586
Query: 533 FPFMS 537
FPF S
Sbjct: 587 FPFAS 591
>AAL66754.1 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 309 bits (792), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 184/545 (33%), Positives = 268/545 (49%), Gaps = 58/545 (10%)
Query: 1 MNIKLQLQTSKKGTLSVSEYLLRLKTLSDSLATIGHPAADDELVLIVLAGLGPEYESFVT 60
+N++L L T+KKG+++V+EY ++K D +A G P D+E+V +L GL E+ V+
Sbjct: 97 VNLRLALSTTKKGSMTVAEYYTKMKGYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVS 156
Query: 61 SITTRTIPPSSSELHSLLLTHEFRLQFVSNSSPNPTALFTQTPSPNPSSSPPFSRSYNPT 120
++ TR P S +L+S LL E +L + + S
Sbjct: 157 ALVTRVDPISLEDLYSQLLNFETKLDLMRGGGEQHQGSANMAGRGGRGNQRGGSGGRGQR 216
Query: 121 QNFNRGYRGRSYYRGGGRGRHSNRGGYPRQSVLGPPPSRQPIICQYCGKYGHSARQCYSL 180
GR+ + GG R SN+GGY R+S S + +CQ C K GH+A +C+
Sbjct: 217 GGRGSSRGGRASWSGG---RQSNQGGYIRRS---NNSSDERPVCQVCFKKGHTAARCW-- 268
Query: 181 NRTTEL---NQSFAALGIDSIAADPHWYMDPGATSHIASDAASQISRSDAPTPESVMVGN 237
+R E ++ A +S D +WY D GAT HI + R + + +
Sbjct: 269 HRFEEDFVPDEKLAGAATNSYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTAS 328
Query: 238 GNTTSVSGVGKFLLPFSNIILHNTLVVPSFKKNLISLSKLLVDLNCVAIFHRKCFLVQDL 297
G+ D + FH F+++D
Sbjct: 329 GS----------------------------------------DNSAFIEFHPNFFVIKDK 348
Query: 298 ATGKTILVGTMSDGLFRVSSPSICSPPINLFAHS-STWFSHLLR----CLASSSCTLFNH 352
T +L G GL+ + + S + S S W + L + +F
Sbjct: 349 DTKNILLKGRCHKGLYPIPATSTIKNALGAVKPSMSRWHNRLGHPSSFIVRQYKSEVFQK 408
Query: 353 FKNFKQLVENQFSKPIQIFQTDGGGEYISNEFSSFLTQNGILHRITCPHTPQQNGVAERK 412
F F+ LVE F + I QTD GGEY ++F + GI H ++CPH QQNG AERK
Sbjct: 409 FHEFQSLVERLFDRKILAVQTDWGGEY--QRLNTFFNKIGISHLVSCPHAHQQNGSAERK 466
Query: 413 IRHLVETALCLLHQSSAPLTFWPDAFQNAIFTINQLPSSVHKGISPFEKLFHKKPDYTYL 472
RH+VE L LL +S PL FW +AF A + IN+ P+ + +PFE+LFHK+PDY+ L
Sbjct: 467 HRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVL 526
Query: 473 RSFGCLCFPLLTPYRSSKLDFKSKPCVFLGYSFNHKGYRCLDITSSRIYISRNVVFDESK 532
R FGC+C+P L PY S KL F+SK CVFLGYS HKG++CLD+++ R+Y+SR+V FDE+
Sbjct: 527 RIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENF 586
Query: 533 FPFMS 537
FPF S
Sbjct: 587 FPFAS 591
>ABA98286.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 304 bits (779), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 182/498 (36%), Positives = 257/498 (51%), Gaps = 23/498 (4%)
Query: 163 ICQYCGKYGHSARQCYSLNRTTEL--NQSFAALGIDSIAADPHWYMDPGATSHIASDAAS 220
ICQ C K GH+A C+ + + AA ++S D +WY+D GAT H+ +
Sbjct: 393 ICQVCFKRGHTAADCWYRYDEDYVPDAKHVAAAAVNSYGVDTNWYIDTGATDHVTGELDK 452
Query: 221 QISRSDAPTPESVMVGNGNTTSVSGVGKFLL--PFS-NIILHNTLVVPSFKKNLISLSKL 277
+ E + +G +S +G ++ P S NI L N L VP KKNL+S+ +L
Sbjct: 453 LTMKEKYNGGEQIHTASGAGMDISHIGHAIVHNPNSRNIHLRNVLYVPQAKKNLVSVHRL 512
Query: 278 LVDLNCVAIFHRKCFLVQDLATGKTILVGTMSDGLFRVSSPSICSPPINLFAHSSTWFSH 337
+ D + HR F ++D T KT+L G L+ + S+ + W
Sbjct: 513 VNDNSAFLELHRDYFFLKDQITRKTLLKGRSWRRLYPLPHSSLKQAYSAIKLSLDRWHHR 572
Query: 338 LLR-CLASSSCTLFNHFKNFKQLVENQFSKPIQIFQTDGGGEYISNEFSSFLTQNGILHR 396
L + + +F+ F+ F+ +VE QF + I QTD GGEY S +SF ++ GI+H
Sbjct: 573 LGHPSITTHKSQVFDKFQEFQVMVERQFDRKILAMQTDWGGEYQS--LNSFFSKIGIVHH 630
Query: 397 ITCPHTPQQNGVAERKIRHLVETALCLLHQSSAPLTFWPDAFQNAIFTINQLPSSVHKGI 456
++CPHT QQNG AERK RH+VE L LL +S PL FW +AFQ A + IN++PS V I
Sbjct: 631 VSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLINRVPSRVIHNI 690
Query: 457 SPFEKLFHKKPDYTYLRSFGCLCFPLLTPYRSSKLDFKSKPCVFLGYSFNHKGYRCLDIT 516
SP EKLF +KPDY+ LR FGC C+P L PY + KL F+SK CVFLG+S HKG++CL+++
Sbjct: 691 SPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVS 750
Query: 517 SSRIYISRNVVFDESKFPFMSSSSFSNLNFSPIRNPNFQPLSLTWSVPLRESGPAGCSLP 576
+ RIYISR+VVFDE+ FPF + N L+ P+R G C P
Sbjct: 751 TGRIYISRDVVFDENIFPFTELHA----NAGARLRSEIDILTPELLGPIRSVGNEQCMHP 806
Query: 577 PVPPSVRSLSPQIVSSTNPRHLHPPSNPTVQRGGQHHSLSHTHVPPTPQPDSNSA-SSDV 635
P +S + + N H R G H P TP D++S D
Sbjct: 807 VTNPLSADVSAALSNRANEPH----------RDGAVHPADAEDSPATPPLDASSGPEPDR 856
Query: 636 HLDTTPSVVVPSPLPNPT 653
+ +P+ + P PT
Sbjct: 857 VVHHSPAAMSSGHHPGPT 874