BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0430.1
(515 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP42039.1 Retrovirus-related Pol polyprotein from transposon TN... 233 5e-68
AAK70406.1 pol polyprotein [Citrus x paradisi] 227 4e-67
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 232 1e-66
>KYP42039.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 394
Score = 233 bits (593), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 148/219 (67%), Gaps = 38/219 (17%)
Query: 320 TGELSPKPADETEYMSRVPYANAVGSIMYVMVCTRPDIWHVVSVVSRYMGRPGKAHWQAV 379
+ +L P+ +E E MS VPYA+AVGS+MY MVCTRPD+ + VS+VSRYM PGK HW AV
Sbjct: 155 SSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAV 214
Query: 380 KWILRYLRGTTELGLVYDRRADTSGSLA-------------------------------- 407
KWI RYL+GT+ +GLV+DR T+ ++A
Sbjct: 215 KWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWK 274
Query: 408 ------LALSTTEAEYMAATEAVKESLWLSGLVGDLGLKQEVTEVFCDNQSAIHLTKNQM 461
ALSTTEAEY++ATE VKE+LW+ GLV +LGL Q+V VFCD+QSAIHLTKN
Sbjct: 275 ASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSR 334
Query: 462 YHERTKHIDVRYHFIKDMIEQGKITIKKVSTADNPADML 500
YH++TKHIDV++HFI+D++ G++ ++KV T++NPADML
Sbjct: 335 YHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADML 373
>AAK70406.1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 227 bits (578), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 146/218 (66%), Gaps = 36/218 (16%)
Query: 325 PKPADETEYMSRVPYANAVGSIMYVMVCTRPDIWHVVSVVSRYMGRPGKAHWQAVKWILR 384
P+ +E +YM+ VPYA+ VGS++Y MVCTRPDI VS+VSRYM PGK+ W AVKWILR
Sbjct: 64 PRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKWILR 123
Query: 385 YLRGTTELGLVY--------------------DRRADTSGSL----------------AL 408
YL GT ++GL++ D++ TSG + +
Sbjct: 124 YLYGTVDVGLLFKKNCGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTI 183
Query: 409 ALSTTEAEYMAATEAVKESLWLSGLVGDLGLKQEVTEVFCDNQSAIHLTKNQMYHERTKH 468
ALSTTEAEY+AATEAVKE++WL GL+GDLG+ QE VFCDNQSAI L KNQ YH RTKH
Sbjct: 184 ALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYHARTKH 243
Query: 469 IDVRYHFIKDMIEQGKITIKKVSTADNPADMLEMLGSQ 506
IDV+YH+++++IE G + +KK+ T DNP+DML + S+
Sbjct: 244 IDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSE 281
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 232 bits (592), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 148/219 (67%), Gaps = 38/219 (17%)
Query: 320 TGELSPKPADETEYMSRVPYANAVGSIMYVMVCTRPDIWHVVSVVSRYMGRPGKAHWQAV 379
+ +L P+ +E E MS VPYA+AVGS+MY MVCTRPD+ + VS+VSRYM PGK HW AV
Sbjct: 264 SSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAV 323
Query: 380 KWILRYLRGTTELGLVYDRRADTSGSLA-------------------------------- 407
KWI RYL+GT+ +GLV+DR T+ ++A
Sbjct: 324 KWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWK 383
Query: 408 ------LALSTTEAEYMAATEAVKESLWLSGLVGDLGLKQEVTEVFCDNQSAIHLTKNQM 461
ALSTTEAEY++ATE VKE+LW+ GLV +LGL Q+V VFCD+QSAIHLTKN
Sbjct: 384 ASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSR 443
Query: 462 YHERTKHIDVRYHFIKDMIEQGKITIKKVSTADNPADML 500
YH++TKHIDV++HFI+D++ G++ ++KV T++NPADML
Sbjct: 444 YHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADML 482