BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2310.1
(356 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_011652746.1 PREDICTED: pentatricopeptide repeat-containing pr... 86 3e-15
XP_010665556.1 PREDICTED: pentatricopeptide repeat-containing pr... 85 1e-14
KMS96737.1 hypothetical protein BVRB_8g200420 [Beta vulgaris sub... 84 1e-14
>XP_011652746.1 PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial [Cucumis sativus] KGN64535.1 hypothetical
protein Csa_1G063590 [Cucumis sativus]
Length = 405
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 243 LLDDEDDPKNI-DICRTAFLRPNGHLNGTTFSTAMSKLKNYKPFHRIPSFLEKFKSLPDR 301
LL E++P+ I DICR A L P HL+ FS A+SKL +K F I FLE+ KS PD
Sbjct: 51 LLKTEENPERIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDL 110
Query: 302 HNERCLTQVIILYGRTGIVDNSFTTFQQVDNIERKKKGKASSSSFLILNL 351
NER I+LYG+ ++D++ TF+Q+D + + K ++ NL
Sbjct: 111 KNERFACHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNL 160
>XP_010665556.1 PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial [Beta vulgaris subsp. vulgaris]
Length = 422
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 243 LLDDEDDPKNI-DICRTAFLRPNGHLNGTTFSTAMSKLKNYKPFHRIPSFLEKFKSLPDR 301
LL E +P+ I DICR A L P HL+ FS A+SKL F I FLE+ K PD
Sbjct: 68 LLKSEKNPEKILDICRAASLTPESHLDRICFSIAVSKLSESNYFEGIRVFLEELKKRPDL 127
Query: 302 HNERCLTQVIILYGRTGIVDNSFTTFQQVDNI 333
NER ++ I+LYG+ G++ N+ TTF+Q++ +
Sbjct: 128 QNERFVSHSIVLYGQAGMIQNAITTFEQMEQL 159
>KMS96737.1 hypothetical protein BVRB_8g200420 [Beta vulgaris subsp. vulgaris]
Length = 400
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 243 LLDDEDDPKNI-DICRTAFLRPNGHLNGTTFSTAMSKLKNYKPFHRIPSFLEKFKSLPDR 301
LL E +P+ I DICR A L P HL+ FS A+SKL F I FLE+ K PD
Sbjct: 46 LLKSEKNPEKILDICRAASLTPESHLDRICFSIAVSKLSESNYFEGIRVFLEELKKRPDL 105
Query: 302 HNERCLTQVIILYGRTGIVDNSFTTFQQVDNI 333
NER ++ I+LYG+ G++ N+ TTF+Q++ +
Sbjct: 106 QNERFVSHSIVLYGQAGMIQNAITTFEQMEQL 137