BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2330.1
(1099 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP46257.1 Retrovirus-related Pol polyprotein from transposon TN... 672 0.0
CAC37623.1 copia-like polyprotein [Arabidopsis thaliana] 665 0.0
AAT85031.1 putative polyprotein [Oryza sativa Japonica Group] AB... 661 0.0
>KYP46257.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1408
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/1118 (38%), Positives = 617/1118 (55%), Gaps = 128/1118 (11%)
Query: 20 PHTPSTNPHFPALSNIANLVSIRLDNSNYLLWRSQLLPILHSQDLYKF-VDGSYPPPAEF 78
P P +N H P+L+ ++ +S +LD NYLLW Q+ P++ L+ + V+ P
Sbjct: 23 PKNPPSNSH-PSLT-FSHTISEKLDTKNYLLWCQQVEPVIKGHRLHHYLVNPQIPQKFAT 80
Query: 79 LPNPSVSSSSSVPNPEFVFWYRIDQMLLSWLNATLTEPVLTQVLGLPSSRAVWEALERNF 138
L + S ++ W + DQ+LLSWL +++++ +LT+V+G SS +W+ + F
Sbjct: 81 LADRDAGHISE----SYLAWEQQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYF 136
Query: 139 SSVNSARLMNLKLQLQTQKKGSLNISDYLLRIKSISDSLAAIGHPIADSELVLIVLSGLG 198
S +A+ L+ +L++ +L+IS+Y+LRI+++ D+L AIG ++ E + I+L GL
Sbjct: 137 HSHMNAKARQLRNELRSTTLDNLSISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLP 196
Query: 199 SDYENFVTSITTRLVAPSYAELHSLLLTHEFRIDLLRQQ---SVQPTTLFSH------NP 249
+YE+ V+ I++R + E+ +LLL HE R+D +++ S+ TT + NP
Sbjct: 197 EEYESTVSLISSRFDLLTIDEVETLLLGHESRLDKFKKKAAASINVTTAVTEPDPSATNP 256
Query: 250 SSHSRSSHQPAQRG--HRGRGNRGGYRGNRGHTSNRGYSNRISSSVLGPPPQIICQYCGK 307
+H +HQ Q G HR RG R RG G SN R G CQ C +
Sbjct: 257 QAHL--THQNNQSGPSHR-RGGRTNSRG--GRFSNWAGRGR------GRFAGYQCQVCHR 305
Query: 308 YGHTARQCYS------LPTSNDLAQAFASMGIDSAPS--DPNWYIDFGASMHISSDIAST 359
YGH A CY +P+S A A+ S + P + NWY D GAS H+++ +
Sbjct: 306 YGHVASACYYRFDETYVPSSPLEAPAYPSNNQHTNPGACNNNWYPDSGASNHVTNVSQNI 365
Query: 360 SSRSEAPHPDHVMVGTGQVTPVSGVGNILL-----PSTSFLLHNVLIAPQFKKNLISVSR 414
+ PD + VG GQ ++ G P F L+N+L P KNLISVS+
Sbjct: 366 HQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQFALNNLLFVPSITKNLISVSQ 425
Query: 415 LLSDFNCIVVFHRHGFFVQEVPTGRRLLVGTI-DEGLFKL-------SSNKAAPPPLF-L 465
D + FH H V+ T LL G++ +GL+K S+ L +
Sbjct: 426 FSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVGSDGLYKFPALLPNPSTQSVQQQQLARI 485
Query: 466 FASTLSSVSPVSSEVWHRRLAHPHQKVFNYVVKHNHLKFQTSVMKSTKCLDCVSGKIHRL 525
F+ ++ SPVS WH RL HP+ V +V ++ +++ S KS C C GK HRL
Sbjct: 486 FSVNTAATSPVSFATWHSRLGHPNVDVMKHVSRNYNIQL-VSNNKSNFCTPCCLGKSHRL 544
Query: 526 PFSSIVHTSSAPNDLIHSDLWGPSPVTSNSSHRYILLFIDDYTRFTYLYFLKTKSEAKLH 585
P + + P DL++SDLWGP+PVTS ++Y + F+D +TRFT++Y LK+K++
Sbjct: 545 PSNLSRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNV 604
Query: 586 FQNFKLFVEKQFEKPIKIFQSDGGGEFVNSDFASFLLANGIQHRRSCPHTPQQNGVAERK 645
F+ F V+ Q+ PIK Q+D GGE+ F ++L GIQHR CPHT QNGVAERK
Sbjct: 605 FKQFHAMVKNQYHHPIKALQTDWGGEY--RSFTTYLNEVGIQHRLICPHTHHQNGVAERK 662
Query: 646 IRHLVETAVCLLHQSSVPSEFWTDAFQTAVYTINRLPTPLLQYQSPYEKLFNDKSSYNDL 705
RH+VE + L+ Q+ +P +FW +F TAVY INRLP+ +Q PY KLF+ Y L
Sbjct: 663 HRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSL 722
Query: 706 RSFGCRCFPLLTPYRSSKLDPKTKPCVFLGYSTLHKGYKCLDVSSSRIYISRHVLFDEEI 765
R FGC CFP L PY KL +++ CVFLGYST HKGYKCL + R+YIS+ V+F+E
Sbjct: 723 RIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCL-AADGRLYISKDVVFNETK 781
Query: 766 FPFS-LPCSSPNSNFKNPNFIPVNLQWTVPPSPFTSTVVPSQTTRPANASSLPSPPGFTP 824
FP+ L SS S+ + +P+++ T+ P+P P+ TR T
Sbjct: 782 FPYKDLFSSSKASDSQ----LPISVPLTINPTP-----TPTHATR------------LTS 820
Query: 825 PNSPSLGTTTSPTQVMPPHNDNIASPSLPSDQPLGPPNPDHLSRNPNPDHPPGIPTTTSS 884
PN P+ SPSL SD + P TS
Sbjct: 821 PNPPT------------------TSPSLISD-----------------SYSPNTAAHTS- 844
Query: 885 TLPNFPSSISNQQTDHLDPSSNPNSLPTYSLHPMITRTRDGTRKTRI---LLTTPSSSME 941
PS++S + +L+PSS+P P +++HPM TR +DG K R+ LL T +
Sbjct: 845 -----PSTLSIPTSSNLEPSSSPIIHP-HNVHPMTTRAKDGIVKPRLQPTLLLT-----Q 893
Query: 942 FEPSTYLQASKYDHWRKAMADEIDALHKNRTWSLVSPPSHGNIVDCKWIFKIKHKADGSV 1001
EP T QA W AM E +AL N TWSLV P H + CKW+F++K +GSV
Sbjct: 894 VEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSV 953
Query: 1002 QRYKARLVARGYSQQHGVDYDETYSPVVRPTTIRSVISLAVSGKWPIKQLDVKNAFLHGN 1061
Q+YKARLVA+G++QQ G DY ET+SPV++P T+R +++LA++ +WPI+QLDV NAFL+G
Sbjct: 954 QKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGT 1013
Query: 1062 LQETVYMRQPKGFEDPSNPNLVCKLHKALYGLKQAPRA 1099
L+E VYM+QP GFE S+ NLVCKLHKA+YGLKQAPRA
Sbjct: 1014 LEEEVYMQQPPGFE-ASDKNLVCKLHKAIYGLKQAPRA 1050
>CAC37623.1 copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/1094 (37%), Positives = 591/1094 (54%), Gaps = 90/1094 (8%)
Query: 29 FPALSNIANLVSIRLDNSNYLLWRSQLLPILHSQDLYKFVDGSYPPPAEFLPNPSVSSSS 88
FP ++++ V+++L++SNYLLW++Q +L SQ L FV+G PPA+ + +S
Sbjct: 7 FPDNVHVSSSVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTS 66
Query: 89 SVPNPEFVFWYRIDQMLLSWLNATLTEPVLTQVLGLPSSRAVWEALERNFSSVNSARLMN 148
VPNP++ W+ DQ++ SWL TL+E VL V L +SR +W +L NF+ + AR +
Sbjct: 67 EVPNPQYEDWFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFS 126
Query: 149 LKLQLQTQKKGSLNISDYLLRIKSISDSLAAIGHPIADSELVLIVLSGLGSDYENFVTSI 208
L+ LQ K ++S Y K I DSL++IG P+ +S + L+GLG +Y+ T I
Sbjct: 127 LRRNLQLLTKKDKSLSVYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPITTVI 186
Query: 209 TT---RLVAPSYAELHSLLLTHEFRIDLLRQQ-SVQPTTLFSHNPSSHSRSSHQPAQRGH 264
+ +L AP++ ++ S + + ++ SV P F+ + S S
Sbjct: 187 QSSLSKLPAPTFNDVISEVQGFDSKLQSYDDTVSVNPHLAFN---TERSNSGAPQYNSNS 243
Query: 265 RGRGNRGGYRGNRGH-TSNRGYSNRISSS-VLGPPPQIICQYCGKYGHTARQCYSLPTSN 322
RGRG G RG G+ T RG+S S+S G P +CQ CG+ GHTA +CY+ +N
Sbjct: 244 RGRGRSGQNRGRGGYSTRGRGFSQHQSASPSSGQRP--VCQICGRIGHTAIKCYNRFDNN 301
Query: 323 DLA----QAFASMGIDSAPSDPNWYIDFGASMHISSDIASTSSRSEAPHPDHVMVGTGQV 378
+ QAF+++ + S + WY D A+ HI++ + + + D V+VG G
Sbjct: 302 YQSEVPTQAFSALRV-SDETGKEWYPDSAATAHITASTSGLQNATTYEGNDAVLVGDGTY 360
Query: 379 TPVSGVGNILLPST--SFLLHNVLIAPQFKKNLISVSRLLSDFNCIVVFHRHGFFVQEVP 436
P++ VG+ + S+ + L+ VL+ P +K+L+SVS+L D+ C V F + + ++
Sbjct: 361 LPITHVGSTTISSSKGTIPLNEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLT 420
Query: 437 TGRRLLVGTIDEGLFKLSSNKAAPPPLFLFASTLSSVSPVSS-EVWHRRLAHPHQKVFNY 495
T + + G + GL+ L +++ F + S+ +S E WH RL H + K+
Sbjct: 421 TQKVVSKGPRNNGLYMLENSE--------FVALYSNRQCAASMETWHHRLGHSNSKILQQ 472
Query: 496 VVKHNHLKFQTSVMKSTKCLDCVSGKIHRLPFSSIVHTSSAPNDLIHSDLWGPSPVTSNS 555
++ ++ S S C C GK RL F S + P D +H DLWGPSPV SN
Sbjct: 473 LLTRKEIQVNKS-RTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQ 531
Query: 556 SHRYILLFIDDYTRFTYLYFLKTKSEAKLHFQNFKLFVEKQFEKPIKIFQSDGGGEFVNS 615
+Y +F+DD++RF++ + L+ KS+ F ++ VE Q IK FQSDGGGEF ++
Sbjct: 532 GFKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQLGTKIKEFQSDGGGEFTSN 591
Query: 616 DFASFLLANGIQHRRSCPHTPQQNGVAERKIRHLVETAVCLLHQSSVPSEFWTDAFQTAV 675
+GI HR SCP+TPQQNGVAERK RHLVE + +L+ S P +FW +AF TA
Sbjct: 592 KLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYHSHTPLKFWVEAFFTAN 651
Query: 676 YTINRLPTPLLQYQSPYEKLFNDKSSYNDLRSFGCRCFPLLTPYRSSKLDPKTKPCVFLG 735
Y N LP+ +L+ SPYE LF K Y LR FG C+P L P +K DP++ CVFLG
Sbjct: 652 YLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPLAKNKFDPRSLQCVFLG 711
Query: 736 YSTLHKGYKCLDVSSSRIYISRHVLFDEEIFPFSLPCSSPNSNFKNPNFIPVNLQWTVPP 795
Y +KGY+CL + ++YISRHV+FDE FPF S + P
Sbjct: 712 YHNQYKGYRCLYPPTGKVYISRHVIFDEAQFPFKEKYHS------------------LVP 753
Query: 796 SPFTSTVVPSQTTRPANASSLPSPPGFTPPNSPSLGTTTSPTQVMPPHNDNIASPSLPSD 855
T+ + Q T TPP+ PS Q+ P + +
Sbjct: 754 KYQTTLLQAWQHT------------DLTPPSVPSSQLQPLARQMTP--------MATSEN 793
Query: 856 QPLGPPNPDHLSRNPNPDHPPGIPTTTSSTLPNFPSSISNQQTDH-----LDPSSNPNSL 910
QP+ N + + TSS + SN + DH L+ + N+L
Sbjct: 794 QPM---------MNYETEEAVNVNMETSSD----EETESNDEFDHEVAPVLNDQNEDNAL 840
Query: 911 PTYS---LHPMITRTRDGTRK--TRILLTTPSSSMEFEPSTYLQASKYDHWRKAMADEID 965
S LHPMITR++DG +K R L SS + EP T A K+ W A+ DEID
Sbjct: 841 GQGSLENLHPMITRSKDGIQKPNPRYALIVSKSSFD-EPKTITTAMKHPSWNAAVMDEID 899
Query: 966 ALHKNRTWSLVSPPSHGNIVDCKWIFKIKHKADGSVQRYKARLVARGYSQQHGVDYDETY 1025
+H TWSLV NI+ KW+FK K K DG++ + KARLVA+G+ Q+ GVDY ET+
Sbjct: 900 RIHMLNTWSLVPATEDMNILTSKWVFKTKLKPDGTIDKLKARLVAKGFDQEEGVDYLETF 959
Query: 1026 SPVVRPTTIRSVISLAVSGKWPIKQLDVKNAFLHGNLQETVYMRQPKGFEDPSNPNLVCK 1085
SPVVR TIR V+ A + +WP+KQLDV NAFLHG LQE V+M QP GF DP+ PN VC+
Sbjct: 960 SPVVRTATIRLVLDTATANEWPLKQLDVSNAFLHGELQEPVFMFQPSGFVDPNKPNHVCR 1019
Query: 1086 LHKALYGLKQAPRA 1099
L KALYGLKQAPRA
Sbjct: 1020 LTKALYGLKQAPRA 1033
>AAT85031.1 putative polyprotein [Oryza sativa Japonica Group] ABF96679.1
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1437
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/1092 (36%), Positives = 584/1092 (53%), Gaps = 62/1092 (5%)
Query: 39 VSIRLDNSNYLLWRSQLLPILHSQDLYKFVDGSYPPPAEFLPNPSVSSSSSVPNPEFVFW 98
VS +L SN+ +W++Q+L + L + G PPA L V NPE+ W
Sbjct: 18 VSEKLGKSNHAVWKAQILATIRGARLEGHLTGDDQPPAPILRRKEGEKEVVVSNPEYEEW 77
Query: 99 YRIDQMLLSWLNATLTEPVLTQVLGLPSSRAVWEALERNFSSVNSARLMNLKLQLQTQKK 158
DQ +L++L +++T+ +L QV ++ + W ++ F S+ AR +N +L L T +K
Sbjct: 78 VATDQQVLAYLLSSMTKDLLVQVATCRTAASAWSMIQGMFGSMTRARTINTRLSLSTLQK 137
Query: 159 GSLNISDYLLRIKSISDSLAAIGHPIADSELVLIVLSGLGSDYENFVTSITTRLVAPSYA 218
G +NI+ Y+ ++++++D L A+G P+ D EL+ + +GL ++E +++I R +
Sbjct: 138 GDMNITTYVGKMRALADDLMAVGKPVDDDELIGYIFAGLDDEFEPVISTIVGRPDPVTIG 197
Query: 219 ELHSLLLTHEFRIDLLR---QQSVQPTTLFSHNPSSHSRSSHQPAQRGHRGRGNRGGYRG 275
E ++ L++ E R+ R Q SV +S SRS QP + G R G+ RG
Sbjct: 198 ETYAQLISFEQRLAHRRSGDQSSV----------NSASRSRGQPQRGGSRSGGDSNRGRG 247
Query: 276 NRGHTSNRGY-----SNRISSSVLGPPPQIICQYCGKYGHTARQCYSLPTSNDL-AQAFA 329
+ +NRG S ++ G + CQ C K GHT C+ N + + FA
Sbjct: 248 APSNGANRGRGRGNPSGGRANVGGGTDNRPKCQLCYKRGHTVCDCWYRYDENFVPDERFA 307
Query: 330 SMGIDSAPSDPNWYIDFGASMHISSDIASTSSRSEAPHPDHVMVGTGQVTPVSGVGNILL 389
+ S D NWY+D GA+ H++ ++ + R + D V +G +S +GN ++
Sbjct: 308 GTAV-SYGVDTNWYLDTGATDHVTGELDKLTVRDKYHGNDQVHTASGAGMEISHIGNSVV 366
Query: 390 --PSTSFLLHNVLIAPQFKKNLISVSRLLSDFNCIVVFHRHGFFVQEVPTGRRLLVGTID 447
PS + L +VL P+ KNL+S +L SD + +R FF++++ R LL G
Sbjct: 367 KTPSRNLHLKDVLYVPKANKNLVSAYKLTSDNLAFIELYRKFFFIKDLAMRRTLLRGRCH 426
Query: 448 EGLFKLSSNKAAPPPLFLFASTLSSVSPVSSEVWHRRLAHPHQKVFNYVVKHNHLKFQTS 507
+GL+ L S P + V+ S E WH RL HP V V+K +L
Sbjct: 427 KGLYALPS----PSSHHHQVKQVYGVTKPSFERWHSRLGHPSYTVVEKVIKSQNLPCLDV 482
Query: 508 VMKSTKCLDCVSGKIHRLPFSSIVHTSSAPNDLIHSDLWGPSPVTSNSSHRYILLFIDDY 567
+ + C C K H+L F S P +L+ SD+WGP+P S +++Y + FIDDY
Sbjct: 483 SEQVSVCDACQKAKSHQLSFPKSTSESKYPLELVFSDVWGPAP-QSVGNNKYYVSFIDDY 541
Query: 568 TRFTYLYFLKTKSEAKLHFQNFKLFVEKQFEKPIKIFQSDGGGEFVNSDFASFLLANGIQ 627
++FT++Y LK KSE F F+ VE+ F + I Q+D GGE+ SF GI
Sbjct: 542 SKFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKIVAMQTDWGGEY--QKLHSFFNKVGIT 599
Query: 628 HRRSCPHTPQQNGVAERKIRHLVETAVCLLHQSSVPSEFWTDAFQTAVYTINRLPTPLLQ 687
H SCPHT QQNG AERK RH+VE + LL SS+P +FW +AF +AVY INR P+ +L
Sbjct: 600 HHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPSRVLH 659
Query: 688 YQSPYEKLFNDKSSYNDLRSFGCRCFPLLTPYRSSKLDPKTKPCVFLGYSTLHKGYKCLD 747
SP E+L K YN LR FGC C+P L PY KL ++ C FLGYSTLHKG+KCLD
Sbjct: 660 DVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLD 719
Query: 748 VSSSRIYISRHVLFDEEIFPFSLPCSSPNSNFKNPNFIPVNLQWTVPPS-PFTSTVVPSQ 806
S+ R+YISR V+FDE FPF+ + + + + L ++P S+V+
Sbjct: 720 PSTGRVYISRDVVFDETQFPFTKLHPNVGAKLRAEIALVPELAASLPRGLQQISSVI--N 777
Query: 807 TTRPANASSLPSPPGFTPPNSPSLGTTTSPTQVM----------PPHNDNIASPSLPSDQ 856
T AN S+ T N P T +P V PP N+ ASP SD
Sbjct: 778 TPENANVSNENMQQDSTYDNEPETETDGAPDTVSANAPAESSGSPPINEP-ASPFGESDS 836
Query: 857 PLGPPNPDHLSRNPNPDHPPGIPTTTSSTLPNFPSSISNQQTDHLDPSSNPNSLPTYSLH 916
P ++ P+PD + S+ P +S + +D ++
Sbjct: 837 ATASPASAPVNSAPHPD-----AAASGSSAPRGSTSQGGTPSVAIDDPHPATTVTGQEAQ 891
Query: 917 PMITRTRDGTRKTRI---------LLTTPSSSMEFEPSTYLQASKYDHWRKAMADEIDAL 967
TR + G RK ++ +LT+ EP A + ++W+ AM E AL
Sbjct: 892 RPRTRLQSGIRKEKVYTDGTVKWGMLTSTG-----EPENLQDALQNNNWKCAMDAEYMAL 946
Query: 968 HKNRTWSLVSPPSHGNIVDCKWIFKIKHKADGSVQRYKARLVARGYSQQHGVDYDETYSP 1027
KN TW LV P N++DCKW++KIK K DGS+ RYKARLVA+G+ Q++G+DY++T+SP
Sbjct: 947 IKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSP 1006
Query: 1028 VVRPTTIRSVISLAVSGKWPIKQLDVKNAFLHGNLQETVYMRQPKGFEDPSNPNLVCKLH 1087
VV+ TIR ++S+AVS W ++QLDV+NAFLHG L+E VYM+QP G+E+PS P+ VCKL
Sbjct: 1007 VVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKLD 1066
Query: 1088 KALYGLKQAPRA 1099
KALYGLKQAPRA
Sbjct: 1067 KALYGLKQAPRA 1078