BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2550.1
(189 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_002460406.1 hypothetical protein SORBIDRAFT_02g027685 [Sorghu... 60 1e-07
XP_008668110.1 PREDICTED: F-box domain containing protein isofor... 59 3e-07
XP_010650194.1 PREDICTED: F-box protein DOR-like [Vitis vinifera] 59 3e-07
>XP_002460406.1 hypothetical protein SORBIDRAFT_02g027685 [Sorghum bicolor]
EER96927.1 hypothetical protein SORBI_002G239300
[Sorghum bicolor]
Length = 417
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 63 SVNGLTCLIDSYREHAARICNISTGQVSPWFEASSIALGK-EYIGLPNHYAFGFDPATNE 121
S NGL C Y+ + +I N +TGQ + I L Y+ Y+FGF P T E
Sbjct: 116 SCNGLLCF---YKTYTLKISNPATGQCLHLLKPDGILLHDFHYL-----YSFGFHPITGE 167
Query: 122 HKLVCVL----RIKSDFPNFEYNLCGVLTIGRQSSNRWRKIEEVPP-CLLNDDYVYVNGV 176
+K V L R KS P F +++ V T+G N+WR I+ V P C+++ V V+G
Sbjct: 168 YKFVHFLREPQRYKSGQP-FHFDIIQVYTLGE---NKWRAIKAVIPCCMVHLGAVNVDGA 223
Query: 177 IYWLN 181
+YWL
Sbjct: 224 MYWLT 228
>XP_008668110.1 PREDICTED: F-box domain containing protein isoform X2 [Zea mays]
XP_008668111.1 PREDICTED: F-box domain containing
protein isoform X2 [Zea mays] XP_008668112.1 PREDICTED:
F-box domain containing protein isoform X2 [Zea mays]
XP_008668113.1 PREDICTED: F-box domain containing
protein isoform X2 [Zea mays] DAA40346.1 TPA: F-box
domain containing protein [Zea mays]
Length = 442
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 63 SVNGLTCLIDSYREHAARICNISTGQVSPWFEASSIALGK-EYIGLPNHYAFGFDPATNE 121
S NGL C Y+ + +I N +TGQ + I L Y+ Y+FGF P T E
Sbjct: 141 SCNGLLCF---YKTYTLKISNPATGQCLHLLKPDGILLYDFHYL-----YSFGFHPITGE 192
Query: 122 HKLVCVL----RIKSDFPNFEYNLCGVLTIGRQSSNRWRKIEE-VPPCLLNDDYVYVNGV 176
+KLV L R KS P F ++ V T+G ++WR I +P C+++ V V+GV
Sbjct: 193 YKLVHFLREPQRYKSGQP-FHFDTIQVYTLGE---DKWRAIRAPIPCCMVHLGVVNVDGV 248
Query: 177 IYWLN 181
+YWL
Sbjct: 249 MYWLT 253
>XP_010650194.1 PREDICTED: F-box protein DOR-like [Vitis vinifera]
Length = 378
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 23/131 (17%)
Query: 56 SYNAISKSVNGLTCLIDSY---REHAARICNISTGQVSPWFEASSIALGKEYIGLPNHY- 111
S+ IS+SVNGL C+ Y + H R+CN ST + + L + P+ +
Sbjct: 85 SHWNISQSVNGLICIYGQYSPKQSHRVRVCNPSTRE--------HVTLPPPFFSDPDLFF 136
Query: 112 ---AFGFDPATNEHKLVCVLRIKSDFPNFEYNLCGVLTIGRQSSNRWRKIEEVPPCLLND 168
+ GFDP+T +K++ S P +E + T+G S+ WR I++ P LL+
Sbjct: 137 QCNSLGFDPSTKTYKILRGWMADSWGPKYE-----IFTLG---SDAWRIIKDAPEALLDT 188
Query: 169 DYVYVNGVIYW 179
+ +NG IYW
Sbjct: 189 RGICLNGTIYW 199