BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3310.1
(197 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAG50698.1 copia-type polyprotein, putative [Arabidopsis thalian... 264 2e-78
AAG60117.1 copia-type polyprotein, putative [Arabidopsis thaliana] 263 2e-78
CAB71063.1 copia-type polyprotein [Arabidopsis thaliana] 263 3e-78
>AAG50698.1 copia-type polyprotein, putative [Arabidopsis thaliana] AAG50765.1
copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 264 bits (674), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 149/192 (77%)
Query: 1 MKNNILSVGQLLEKGYDIRLKDLHLTLRDRSGTLIAKVKMAKNRLFPLNIQHGDAKCLNS 60
MK NILS+GQLLEKGYDIRLKD +L++RD+ LI KV M+KNR+F LNI++ A+CL
Sbjct: 400 MKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKM 459
Query: 61 IVKDESWLWHLRLGHLNLDGMKTLASKNMVRGLPCIDHPNKVCEGCIFGKHHCTSFSKEG 120
K+ESWLWHLR GHLN G++ L+ K MVRGLPCI+HPN+VCEGC+ GK SF KE
Sbjct: 460 CYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKES 519
Query: 121 RWRASNILELVHTDVCGPLKLMTSGGNNYFLTFIDDFSRKTWVYFLKKKSEVFEAFKEFK 180
RA LEL+HTDVCGP+K + G +NYFL FIDDFSRKTWVYFLK+KSEVFE FK+FK
Sbjct: 520 SSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFK 579
Query: 181 NMVEKQSGFYYK 192
VEK+SG K
Sbjct: 580 AHVEKESGLVIK 591
>AAG60117.1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 263 bits (673), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 149/192 (77%)
Query: 1 MKNNILSVGQLLEKGYDIRLKDLHLTLRDRSGTLIAKVKMAKNRLFPLNIQHGDAKCLNS 60
MK NILS+GQLLEKGYDIRLKD +L++RD+ LI KV M+KNR+F LNI++ A+CL
Sbjct: 400 MKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKM 459
Query: 61 IVKDESWLWHLRLGHLNLDGMKTLASKNMVRGLPCIDHPNKVCEGCIFGKHHCTSFSKEG 120
K+ESWLWHLR GHLN G++ L+ K MVRGLPCI+HPN+VCEGC+ GK SF KE
Sbjct: 460 CYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKES 519
Query: 121 RWRASNILELVHTDVCGPLKLMTSGGNNYFLTFIDDFSRKTWVYFLKKKSEVFEAFKEFK 180
RA LEL+HTDVCGP+K + G +NYFL FIDDFSRKTWVYFLK+KSEVFE FK+FK
Sbjct: 520 SSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFK 579
Query: 181 NMVEKQSGFYYK 192
VEK+SG K
Sbjct: 580 AHVEKESGLVIK 591
>CAB71063.1 copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 263 bits (673), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 149/192 (77%)
Query: 1 MKNNILSVGQLLEKGYDIRLKDLHLTLRDRSGTLIAKVKMAKNRLFPLNIQHGDAKCLNS 60
MK NILS+GQLLEKGYDIRLKD +L++RD+ LI KV M+KNR+F LNI++ A+CL
Sbjct: 400 MKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKM 459
Query: 61 IVKDESWLWHLRLGHLNLDGMKTLASKNMVRGLPCIDHPNKVCEGCIFGKHHCTSFSKEG 120
K+ESWLWHLR GHLN G++ L+ K MVRGLPCI+HPN+VCEGC+ GK SF KE
Sbjct: 460 CYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKES 519
Query: 121 RWRASNILELVHTDVCGPLKLMTSGGNNYFLTFIDDFSRKTWVYFLKKKSEVFEAFKEFK 180
RA LEL+HTDVCGP+K + G +NYFL FIDDFSRKTWVYFLK+KSEVFE FK+FK
Sbjct: 520 SSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFK 579
Query: 181 NMVEKQSGFYYK 192
VEK+SG K
Sbjct: 580 AHVEKESGLVIK 591