BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3430.1
(247 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_002273586.1 PREDICTED: transcription initiation factor TFIID ... 248 2e-77
XP_011013735.1 PREDICTED: transcription initiation factor TFIID ... 236 4e-73
XP_002315063.1 zinc finger family protein [Populus trichocarpa] ... 235 1e-72
>XP_002273586.1 PREDICTED: transcription initiation factor TFIID subunit 15 [Vitis
vinifera] XP_010654496.1 PREDICTED: transcription
initiation factor TFIID subunit 15 [Vitis vinifera]
CBI27458.3 unnamed protein product, partial [Vitis
vinifera]
Length = 414
Score = 248 bits (634), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/186 (86%), Positives = 168/186 (90%), Gaps = 3/186 (1%)
Query: 5 TSCGNVNFAFRGVCNRCGSARPAGASGTGAGAVGRGRGRG-DDSGGRGRSIGAPAGLFGP 63
TSC NVNFAFRGVCNRCGSARP+G SG+GAGA GRGRGRG DS G GRS+GAP GLFGP
Sbjct: 164 TSCSNVNFAFRGVCNRCGSARPSGVSGSGAGAGGRGRGRGGPDSAGHGRSVGAPTGLFGP 223
Query: 64 NDWSCPMCANINWAKRLKCNICNTNKPGTNEGGVRGGRAGGYKELDEEEIEETRRRRREA 123
NDW CPMC NINWAKR KCNICNTNKPG NEGGVRGGR GGYKELDEEE+EET+RRRREA
Sbjct: 224 NDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREA 283
Query: 124 EEDDGELYDEFGNLKKKFRAKTHQAEAGQVLRGAGRAGWEVEEL--AERDSRERSKDRGR 181
EEDDGELYDEFGNLKKKFRAKT QAEAGQVL GAGRAGWEVEEL A+RD RERSKDRGR
Sbjct: 284 EEDDGELYDEFGNLKKKFRAKTQQAEAGQVLPGAGRAGWEVEELGMADRDGRERSKDRGR 343
Query: 182 ERNDRE 187
ER+DRE
Sbjct: 344 ERDDRE 349
>XP_011013735.1 PREDICTED: transcription initiation factor TFIID subunit 15 isoform
X2 [Populus euphratica]
Length = 387
Score = 236 bits (602), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 169/241 (70%), Positives = 187/241 (77%), Gaps = 12/241 (4%)
Query: 5 TSCGNVNFAFRGVCNRCGSARPAGASGTGAGAVGRGRGRG-DDSGGRGRSIGAPAGLFGP 63
TSC NVNFAFRGVCN CGSARP+G SG AG GRGRGRG +DSG GRS+G P GLFGP
Sbjct: 155 TSCSNVNFAFRGVCNLCGSARPSGPSGGAAGGGGRGRGRGANDSGAHGRSVGGPTGLFGP 214
Query: 64 NDWSCPMCANINWAKRLKCNICNTNKPGTNEGGVRGGRAGGYKELDEEEIEETRRRRREA 123
NDW CPMC NINWAKR+KCNICNTNKPG NE GVRGGR GGYKELDEEE+EET+RRR+EA
Sbjct: 215 NDWPCPMCGNINWAKRMKCNICNTNKPGHNEAGVRGGRGGGYKELDEEELEETKRRRKEA 274
Query: 124 EEDDGELYDEFGNLKKKFRAKTHQAEAGQVLRGAGRAGWEVEELAERDSR--ERSKDRGR 181
EEDDGELYDEFGNLKKKFRAKT QAEAG+VL GAGRAGWEVEEL D ERS++RGR
Sbjct: 275 EEDDGELYDEFGNLKKKFRAKTQQAEAGRVLPGAGRAGWEVEELGAVDKHGRERSRERGR 334
Query: 182 ERNDRESRSHERDGYKRRSRSRSKDRVRDREERGKDRERDRFRDYDHDRSREHGRDRDRE 241
+ +DRES ++R R R +DR RDR RDY++ R RE+GRDRDR
Sbjct: 335 DHDDRES---------SKTREHDDRDRRLSRSRERDRGRDRDRDYEYSRDREYGRDRDRY 385
Query: 242 R 242
R
Sbjct: 386 R 386
>XP_002315063.1 zinc finger family protein [Populus trichocarpa] EEF01234.1 zinc
finger family protein [Populus trichocarpa]
Length = 387
Score = 235 bits (599), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 174/244 (71%), Positives = 193/244 (79%), Gaps = 18/244 (7%)
Query: 5 TSCGNVNFAFRGVCNRCGSARPAGASGTGAGAVGRGRGRG-DDSGGRGRSIGAPAGLFGP 63
TSC NVNFAFRGVCN CGSARP+G SG AG GRGRGRG +DSG GRS+GAP GLFGP
Sbjct: 155 TSCSNVNFAFRGVCNLCGSARPSGPSGGAAGGGGRGRGRGANDSGAHGRSVGAPTGLFGP 214
Query: 64 NDWSCPMCANINWAKRLKCNICNTNKPGTNEGGVRGGRAGGYKELDEEEIEETRRRRREA 123
NDW CPMC NINWAKR+KCNICNTNKPG NE GVRGGRAGGYKELDEEE+EET+RRR+EA
Sbjct: 215 NDWPCPMCGNINWAKRMKCNICNTNKPGHNEAGVRGGRAGGYKELDEEELEETKRRRKEA 274
Query: 124 EEDDGELYDEFGNLKKKFRAKTHQAEAGQVLRGAGRAGWEVEELAERDSR--ERSKDRGR 181
EEDDGELYDEFGNLKKKFRAKT QAEAG+VL GAGRAGWEVEEL D ERS++RGR
Sbjct: 275 EEDDGELYDEFGNLKKKFRAKTQQAEAGRVLLGAGRAGWEVEELGAVDKHGRERSRERGR 334
Query: 182 ERNDRESRSHERDGYKRRSRSRSKDRVRDR---EERGKDRERDRFRDYDHDRSREHGRDR 238
+++DRES S++R D RDR R +DR RDR RDY++ R RE+GRDR
Sbjct: 335 DQDDRES-----------SKTREHDE-RDRRLSRSRERDRGRDRDRDYEYGRDREYGRDR 382
Query: 239 DRER 242
R R
Sbjct: 383 HRHR 386