BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3470.1
(149 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN70933.1 hypothetical protein VITISV_032482 [Vitis vinifera] 235 2e-77
XP_003631633.1 PREDICTED: mediator of RNA polymerase II transcri... 233 7e-77
XP_010255836.1 PREDICTED: mediator of RNA polymerase II transcri... 232 2e-76
>CAN70933.1 hypothetical protein VITISV_032482 [Vitis vinifera]
Length = 145
Score = 235 bits (599), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 116/149 (77%), Positives = 128/149 (85%), Gaps = 4/149 (2%)
Query: 1 MDSTVDALNNAYQEYIAAAAAVIEAKEISGGQKTSTTESALENFKQKWELFRVACDQAEE 60
MD+ VDALNNAYQE+++AAA+V+EAKE SG QKT+ T++ALENFKQ+WELFRVACDQAEE
Sbjct: 1 MDNIVDALNNAYQEFVSAAASVLEAKESSGAQKTAATDAALENFKQRWELFRVACDQAEE 60
Query: 61 FVESVKQRIGSECLVDEATGSSATTNGKLGQTMTSTGLPPISAVRLEQMSKAVRWLVIEL 120
FVESVKQRIGSECLVDEATGS A GK GQ +T TGLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61 FVESVKQRIGSECLVDEATGSVA---GKPGQAVT-TGLPPISAVRLEQMSKAVRWLVIEL 116
Query: 121 QQGSGVNSAASHNQSSVPFDARFSEDAGQ 149
Q GSG SH+ S PFDARFSEDA Q
Sbjct: 117 QHGSGTAGGPSHSHVSAPFDARFSEDAAQ 145
>XP_003631633.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32
[Vitis vinifera]
Length = 145
Score = 233 bits (595), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 115/149 (77%), Positives = 128/149 (85%), Gaps = 4/149 (2%)
Query: 1 MDSTVDALNNAYQEYIAAAAAVIEAKEISGGQKTSTTESALENFKQKWELFRVACDQAEE 60
MD+ VDALNNAYQE+++AAA+V+EAKE SG QKT+ T++ALENFKQ+WELFRVACDQAEE
Sbjct: 1 MDNIVDALNNAYQEFVSAAASVLEAKESSGAQKTAATDAALENFKQRWELFRVACDQAEE 60
Query: 61 FVESVKQRIGSECLVDEATGSSATTNGKLGQTMTSTGLPPISAVRLEQMSKAVRWLVIEL 120
FVESVKQRIGSECLVDEATGS A GK GQ +T+ GLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61 FVESVKQRIGSECLVDEATGSVA---GKPGQAVTA-GLPPISAVRLEQMSKAVRWLVIEL 116
Query: 121 QQGSGVNSAASHNQSSVPFDARFSEDAGQ 149
Q GSG SH+ S PFDARFSEDA Q
Sbjct: 117 QHGSGTAGGPSHSHVSAPFDARFSEDAAQ 145
>XP_010255836.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32
[Nelumbo nucifera] XP_010255837.1 PREDICTED: mediator of
RNA polymerase II transcription subunit 32 [Nelumbo
nucifera] XP_010255838.1 PREDICTED: mediator of RNA
polymerase II transcription subunit 32 [Nelumbo
nucifera]
Length = 144
Score = 232 bits (592), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 112/147 (76%), Positives = 125/147 (85%), Gaps = 4/147 (2%)
Query: 1 MDSTVDALNNAYQEYIAAAAAVIEAKEISGGQKTSTTESALENFKQKWELFRVACDQAEE 60
MDS VD LNN YQ++IAAAA V+EAKEISGGQKT+ T++AL+NFKQ+WELFRVACDQAEE
Sbjct: 1 MDSIVDTLNNEYQDFIAAAAGVLEAKEISGGQKTAATDAALDNFKQRWELFRVACDQAEE 60
Query: 61 FVESVKQRIGSECLVDEATGSSATTNGKLGQTMTSTGLPPISAVRLEQMSKAVRWLVIEL 120
FVESVKQRI SECLVDEATGS +G+ T+TGLPPISAVRLEQMSKAVRWLV+EL
Sbjct: 61 FVESVKQRISSECLVDEATGSVTQKSGQ----ATTTGLPPISAVRLEQMSKAVRWLVLEL 116
Query: 121 QQGSGVNSAASHNQSSVPFDARFSEDA 147
Q GSG + SH SSVPFDARFSEDA
Sbjct: 117 QHGSGTGATTSHPHSSVPFDARFSEDA 143