BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3710.1
(321 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA11674.1 unnamed protein product [Nicotiana tabacum] 354 e-109
AAV88069.1 hypothetical retrotransposon [Ipomoea batatas] 335 e-101
KYP59970.1 Retrovirus-related Pol polyprotein from transposon TN... 308 e-100
>BAA11674.1 unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 354 bits (909), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 218/349 (62%), Gaps = 87/349 (24%)
Query: 1 MGEHGYNKTTSDHCVFVQRFGEGDFIILLLYVDDMLIVGRNSRRILELKKQLSKFFAMKD 60
MG+HGY KTTSDHCVF Q+F + DFIILLLYVDDMLIVGRN RI LK+QLSKFFAMKD
Sbjct: 979 MGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKD 1038
Query: 61 LGPAKQILGIRIVRDRENRLIHLSQEKYIEKILQRFCMDKSKAVSTSLAGHFRLSSQHSP 120
LGPAKQILG+RI+RDRE + + LSQEKYIEK+LQRF M+K+KAVS LA HFRLS++ SP
Sbjct: 1039 LGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSP 1098
Query: 121 STDSELEAMERVPYASAVGSLMYAMVYTRPDIA----------------HAEVYFWLLG- 163
STD E MER+PYASAVGSLMYAMV TRPDIA H + W+L
Sbjct: 1099 STDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRY 1158
Query: 164 -----------------------------------------NICRGAVAWQSRLQKCVAL 182
N GAV+WQS+LQKCVAL
Sbjct: 1159 LRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQKCVAL 1218
Query: 183 STTEVEFIAATEACKELLWMKNYLEEIGFNQD---------------------------- 214
STTE EFIAATEACKEL+WMK +L E+GF+QD
Sbjct: 1219 STTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSAIHLAKNASFHSRSKHID 1278
Query: 215 -KYHWIRDVVASKELELVKVHTDDNRADMMTKALPKGKLELCRGIVGLV 262
+Y+WIRDV+ K L L K+HTD+N +DM+TK LPKGK E CR G+V
Sbjct: 1279 VRYNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLPKGKFEFCREAAGIV 1327
>AAV88069.1 hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 335 bits (858), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/335 (52%), Positives = 220/335 (65%), Gaps = 70/335 (20%)
Query: 1 MGEHGYNKTTSDHCVFVQRFGEGDFIILLLYVDDMLIVGRNSRRILELKKQLSKFFAMKD 60
M +HGY KT+SDHCVFV R+ + DF+ILLLYVDDMLIVGRN+ RI ELK++LSK F+MKD
Sbjct: 976 MSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKD 1035
Query: 61 LGPAKQILGIRIVRDRENRLIHLSQEKYIEKILQRFCMDKSKAVSTSLAGHFRLSSQHSP 120
+GPAKQILG++I+RDR+N+ + LSQEKYIEK+L+RF M+++K VST L HF+L + P
Sbjct: 1036 MGPAKQILGMKIIRDRQNKKLWLSQEKYIEKVLERFHMNEAKPVSTPLDMHFKLCKKQCP 1095
Query: 121 STDSELEAMERVPYASAVGSLMYAMVYTRPDIAHA----------------EVYFWLLG- 163
S++ E E M+RVPY+SAVGSLMYAMV TRPDIAHA + W+L
Sbjct: 1096 SSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAVKWILRY 1155
Query: 164 -------NICRG----------------------------------AVAWQSRLQKCVAL 182
++C G AV+WQSRLQKCV L
Sbjct: 1156 LRGTSSLSLCFGTGKPILTGYTDSDMAGDIDTRKSTSGYLITYAGGAVSWQSRLQKCVDL 1215
Query: 183 STTEVEFIAATEACKELLWMKNYLEEIGFNQD-------KYHWIRDVVASKELELVKVHT 235
STTE EFIA+ EA KE+LWMK +L+E+GF QD +YHWIRD++ K LEL K+HT
Sbjct: 1216 STTEAEFIASVEASKEMLWMKKFLQELGFVQDRSKHIDTRYHWIRDILECKMLELEKIHT 1275
Query: 236 DDNRADMMTKALPKGKL-----ELCRGIVGLVVLE 265
DDN +DMMTKALP+GK E C G + V+LE
Sbjct: 1276 DDNGSDMMTKALPRGKFEEAMGECCNGFLRTVILE 1310
>KYP59970.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 412
Score = 308 bits (790), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 208/351 (59%), Gaps = 87/351 (24%)
Query: 1 MGEHGYNKTTSDHCVFVQRFGEGDFIILLLYVDDMLIVGRNSRRILELKKQLSKFFAMKD 60
M + GY KTTSDHCVFV++F DFIILLLYVDDMLIV ++ RI LKK+L + FAMKD
Sbjct: 58 MCDQGYKKTTSDHCVFVKKFSNDDFIILLLYVDDMLIVRKDVSRIDRLKKKLGESFAMKD 117
Query: 61 LGPAKQILGIRIVRDRENRLIHLSQEKYIEKILQRFCMDKSKAVSTSLAGHFRLSSQHSP 120
+G AKQILGIRI+RDRE + LSQE+YI+++LQRF ++ +KAVST A HF+LS + SP
Sbjct: 118 MGAAKQILGIRIIRDREKWKLWLSQEQYIKRVLQRFQIENAKAVSTPFATHFKLSVKQSP 177
Query: 121 STDSELEAMERVPYASAVGSLMYAMVYTR----------------PDIAHAEVYFWLL-- 162
S +E MERVPYASAVGSLMYAMV TR P H W+L
Sbjct: 178 SNKAEKLDMERVPYASAVGSLMYAMVCTRPYIAHAVGTVSRFLSNPGREHWNSVKWILRY 237
Query: 163 ---------------------------GNI-------------CRGAVAWQSRLQKCVAL 182
G++ GAVAWQSRLQ+CV L
Sbjct: 238 LHGTVDMKLCFGGDKPTLVGYSDSDMAGDVDSRKSTSGYLIKFAGGAVAWQSRLQRCVTL 297
Query: 183 STTEVEFIAATEACKELLWMKNYLEEIGFNQDK--------------------------- 215
STTE EFIA TEACKELLW+K +L+E+GF QDK
Sbjct: 298 STTEAEFIAITEACKELLWLKKFLQELGFVQDKYPLFVDSQSAIHLGKNPTFHSRSKHID 357
Query: 216 --YHWIRDVVASKELELVKVHTDDNRADMMTKALPKGKLELCRGIVGLVVL 264
YHWIRD + +K LEL K+HTDDN A+MMTKALP+GK E+C I GL V+
Sbjct: 358 VRYHWIRDALDAKLLELAKIHTDDNGANMMTKALPRGKFEICFEIAGLAVI 408