BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3740.1
(140 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN70933.1 hypothetical protein VITISV_032482 [Vitis vinifera] 195 5e-62
XP_010255836.1 PREDICTED: mediator of RNA polymerase II transcri... 195 8e-62
XP_008361316.1 PREDICTED: mediator of RNA polymerase II transcri... 194 1e-61
>CAN70933.1 hypothetical protein VITISV_032482 [Vitis vinifera]
Length = 145
Score = 195 bits (496), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 107/128 (83%), Gaps = 4/128 (3%)
Query: 13 LLKPKEISGGEKTSTTESALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGS 72
+L+ KE SG +KT+ T++ALENFKQ+WELFRVACDQAEEFVESVKQRIGSECLVDEATGS
Sbjct: 22 VLEAKESSGAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATGS 81
Query: 73 SATTNGKLGQTMTSTGLPPISAVRLEQMSKAVRWLVIELQQGSGVNSAASHNQSSVPFDA 132
A GK GQ +T TGLPPISAVRLEQMSKAVRWLVIELQ GSG SH+ S PFDA
Sbjct: 82 VA---GKPGQAVT-TGLPPISAVRLEQMSKAVRWLVIELQHGSGTAGGPSHSHVSAPFDA 137
Query: 133 RFSEDAGQ 140
RFSEDA Q
Sbjct: 138 RFSEDAAQ 145
>XP_010255836.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32
[Nelumbo nucifera] XP_010255837.1 PREDICTED: mediator of
RNA polymerase II transcription subunit 32 [Nelumbo
nucifera] XP_010255838.1 PREDICTED: mediator of RNA
polymerase II transcription subunit 32 [Nelumbo
nucifera]
Length = 144
Score = 195 bits (495), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 107/127 (84%), Gaps = 4/127 (3%)
Query: 13 LLKPKEISGGEKTSTTESALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGS 72
+L+ KEISGG+KT+ T++AL+NFKQ+WELFRVACDQAEEFVESVKQRI SECLVDEATGS
Sbjct: 22 VLEAKEISGGQKTAATDAALDNFKQRWELFRVACDQAEEFVESVKQRISSECLVDEATGS 81
Query: 73 SATTNGKLGQTMTSTGLPPISAVRLEQMSKAVRWLVIELQQGSGVNSAASHNQSSVPFDA 132
+G+ T+TGLPPISAVRLEQMSKAVRWLV+ELQ GSG + SH SSVPFDA
Sbjct: 82 VTQKSGQ----ATTTGLPPISAVRLEQMSKAVRWLVLELQHGSGTGATTSHPHSSVPFDA 137
Query: 133 RFSEDAG 139
RFSEDA
Sbjct: 138 RFSEDAA 144
>XP_008361316.1 PREDICTED: mediator of RNA polymerase II transcription subunit
32-like [Malus domestica] XP_008361321.1 PREDICTED:
mediator of RNA polymerase II transcription subunit
32-like [Malus domestica]
Length = 144
Score = 194 bits (493), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 108/128 (84%), Gaps = 5/128 (3%)
Query: 13 LLKPKEISGGEKTSTTESALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGS 72
+L+ KE SGG+KT+ T++ALENFKQKWELFRV CDQAEEFVESVKQRIGSECLVDEATG
Sbjct: 22 VLESKETSGGQKTAATDAALENFKQKWELFRVTCDQAEEFVESVKQRIGSECLVDEATGL 81
Query: 73 SATTNGKLGQTMTSTGLPPISAVRLEQMSKAVRWLVIELQQGSGVNSAASHNQSSVPFDA 132
A GK GQ T+TGLPPISAVRLEQMSKAVRWLVIELQ GSG + A+H+ S PFD+
Sbjct: 82 VA---GKTGQ--TATGLPPISAVRLEQMSKAVRWLVIELQHGSGTAAGAAHSHPSTPFDS 136
Query: 133 RFSEDAGQ 140
RFSED+ Q
Sbjct: 137 RFSEDSAQ 144