BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3790.1
(206 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CBI31119.3 unnamed protein product, partial [Vitis vinifera] 274 3e-87
XP_002265420.1 PREDICTED: pentatricopeptide repeat-containing pr... 275 5e-87
XP_010277322.1 PREDICTED: pentatricopeptide repeat-containing pr... 270 4e-85
>CBI31119.3 unnamed protein product, partial [Vitis vinifera]
Length = 512
Score = 274 bits (701), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 159/205 (77%), Gaps = 16/205 (7%)
Query: 1 MYAKCGCIETASQVFNEMSERDVFAFTSMISGLANHGRSKRVIELFIKMGEDGGNPNELL 60
MYAKCGC+ETA +VF+EM +RDVFAFTS+ISGLANHG S IE+F +M +G PNE+
Sbjct: 264 MYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEV- 322
Query: 61 LKPKYFVNFGRHISTFYSLVLSACSRMGLVEEGMRFFKSMNEVYGIEQSIGHYGCMVDLL 120
TF L LSACSR+GLVEEG+R FKSM +YGIE + HYGC+VDLL
Sbjct: 323 --------------TFICL-LSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLL 367
Query: 121 GRASMLDEAKKLVSEMSMEPDSYVLGALLNACGMHGDVELGREMVERLAGRSLDSDGVHV 180
GRA ML++AK++V EM +EPDSYVLGALLNAC +HGDVELG+E VE LA RSLD GVHV
Sbjct: 368 GRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHV 427
Query: 181 LLSNMYASANQWEDVVKVRKKMEDK 205
LLSNMYASANQWEDV KVRK ME+K
Sbjct: 428 LLSNMYASANQWEDVAKVRKGMEEK 452
>XP_002265420.1 PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera] XP_010646695.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera] XP_010646696.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera] XP_010646697.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera] XP_010646698.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera] XP_010646699.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera] XP_010646700.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 275 bits (702), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 159/205 (77%), Gaps = 16/205 (7%)
Query: 1 MYAKCGCIETASQVFNEMSERDVFAFTSMISGLANHGRSKRVIELFIKMGEDGGNPNELL 60
MYAKCGC+ETA +VF+EM +RDVFAFTS+ISGLANHG S IE+F +M +G PNE+
Sbjct: 289 MYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEV- 347
Query: 61 LKPKYFVNFGRHISTFYSLVLSACSRMGLVEEGMRFFKSMNEVYGIEQSIGHYGCMVDLL 120
TF L LSACSR+GLVEEG+R FKSM +YGIE + HYGC+VDLL
Sbjct: 348 --------------TFICL-LSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLL 392
Query: 121 GRASMLDEAKKLVSEMSMEPDSYVLGALLNACGMHGDVELGREMVERLAGRSLDSDGVHV 180
GRA ML++AK++V EM +EPDSYVLGALLNAC +HGDVELG+E VE LA RSLD GVHV
Sbjct: 393 GRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHV 452
Query: 181 LLSNMYASANQWEDVVKVRKKMEDK 205
LLSNMYASANQWEDV KVRK ME+K
Sbjct: 453 LLSNMYASANQWEDVAKVRKGMEEK 477
>XP_010277322.1 PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Nelumbo nucifera] XP_010277323.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Nelumbo nucifera] XP_010277324.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Nelumbo nucifera] XP_010277325.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Nelumbo nucifera] XP_010277326.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Nelumbo nucifera]
Length = 539
Score = 270 bits (689), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 136/205 (66%), Positives = 157/205 (76%), Gaps = 16/205 (7%)
Query: 1 MYAKCGCIETASQVFNEMSERDVFAFTSMISGLANHGRSKRVIELFIKMGEDGGNPNELL 60
MY+KCGCI+TA QVFNEM ERDV+ FTSMISGL+NHG+S IELF++M ++G PNE+
Sbjct: 287 MYSKCGCIDTARQVFNEMPERDVYTFTSMISGLSNHGQSASAIELFVEMQKEGVKPNEV- 345
Query: 61 LKPKYFVNFGRHISTFYSLVLSACSRMGLVEEGMRFFKSMNEVYGIEQSIGHYGCMVDLL 120
TF VLSACSRMGLVEEG+RFF SM EVY I + HYGC+VDLL
Sbjct: 346 --------------TFIC-VLSACSRMGLVEEGLRFFNSMTEVYAINPGVEHYGCLVDLL 390
Query: 121 GRASMLDEAKKLVSEMSMEPDSYVLGALLNACGMHGDVELGREMVERLAGRSLDSDGVHV 180
GRA ML+EAKK+V+EM MEPDSYVLGALLNAC +HG+VELG+E V L RSLD GVHV
Sbjct: 391 GRAGMLEEAKKVVTEMPMEPDSYVLGALLNACRVHGNVELGKETVGSLMDRSLDHGGVHV 450
Query: 181 LLSNMYASANQWEDVVKVRKKMEDK 205
LLSN+YASANQWE V VRK ME+K
Sbjct: 451 LLSNIYASANQWEVVEMVRKGMEEK 475
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 22/167 (13%)
Query: 2 YAKCGCIETASQVFNEMSERDVFAFTSMISGLANHGRSKRVIELFIKMGEDGGNPNELLL 61
Y K G +E A Q+F +M ER+ ++++MI+G A G+ + +ELF +M G PN
Sbjct: 187 YCKSGQLEIARQLFEKMPERNAVSWSAMITGYAQVGKFRESLELFNEMQHAGFQPN---- 242
Query: 62 KPKYFVNFGRHISTFYSLVLSACSRMGLVEEGMRFFKSMNEVYGIEQSIGHYGCMVDLLG 121
H + LSAC+ +G +++G R+ + + +E +VD+
Sbjct: 243 ----------HAGIVGA--LSACAFLGALDQG-RWIHAYVDRNKMELDRILGTALVDMYS 289
Query: 122 RASMLDEAKKLVSEMSMEPDSYVLGALLNACGMHGD----VELGREM 164
+ +D A+++ +EM E D Y ++++ HG +EL EM
Sbjct: 290 KCGCIDTARQVFNEMP-ERDVYTFTSMISGLSNHGQSASAIELFVEM 335