BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4030.1
(806 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAT85194.1 putative polyprotein [Oryza sativa Japonica Group] 842 0.0
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 832 0.0
ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass... 835 0.0
>AAT85194.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/793 (54%), Positives = 548/793 (69%), Gaps = 53/793 (6%)
Query: 1 MVENKTGRKLKTLRSDNGIEYTDGAFKEFCNQEGIVRHWTVVNTPQQNGVAERLNRTLLE 60
MVE +T RK+K LR+DNG+E FK +C EGIVRH+TV +TPQQNGVAER+NRT++
Sbjct: 455 MVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIIS 514
Query: 61 KARCMRSNSGLGVEWWAESVATACYIVNRSPHSSLDGGIPYEVWSGEHVDYGRLRVFGCT 120
KARCM SN+ L ++WAE+V+TACY++NRSP ++D P EVWSG +Y LRVFGCT
Sbjct: 515 KARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCT 574
Query: 121 AYYHIKGNKLDNRAKKAIFLGYATGVKGYRLWCTEDKKFVISRDVVFDESSIVAMAKAT- 179
AY H+ KL+ R K IFLGY +GVKGY+LWC E KK VISR+VVF ES ++ +T
Sbjct: 575 AYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTN 634
Query: 180 VPSCGDVGSTKAQVVEVEAEDQRVSRNHDQVKHQDKTQDEEIDEPDHEEVQGEGTQVLQQ 239
VP V S + V+VE +S H K +D I++ D ++ + ++QQ
Sbjct: 635 VP----VESQEKVSVQVE---HLISSGHAPEK-----EDVAINQ-DAPVIEDSDSSIVQQ 681
Query: 240 QQQDVSVHTRPKRLYKPVQRLGSDKPLRHYWQTNLVEYALSVEDD-----EPITFKQAIT 294
+ RPKR KP P R+ + N+V YALSV ++ EP T+ AI
Sbjct: 682 SPKRSIAKDRPKRNTKP--------PRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIV 733
Query: 295 AAERESWLVAIQEEMESLHKNQTWEVVPLPEGKFVIGCKWVYKKKEDSSEIKGTRYKARL 354
+ + W+ A+ +EMESL KN +WE+ LP+ K I CKW++K+KE S RYKARL
Sbjct: 734 SDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARL 793
Query: 355 VAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLELEQLDVKTAFLHGDLEEEIYM 414
VAKGY+Q G+D+N++FSPVVKH+SIR LLSIVA D ELEQ+DVKTAFLHG+LEE+IYM
Sbjct: 794 VAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 853
Query: 415 AQPEGYKVEGKENQVCRLRKSLYRLKQSPRQWYKQFDFFMLKHSFRRSEYDFCVYIKKLR 474
QPEG+ V GKEN VCRL+KSLY LKQSPRQWYK+FD FML FRRS YD CVY+K +
Sbjct: 854 EQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVV- 912
Query: 475 EGDFIYLLLYVDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSSKKL 534
+G IYLLLYVDDMLIA++ EI KLK+QLS EFEMKD+GAAKKILGMEI RER S KL
Sbjct: 913 DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKL 972
Query: 535 YLNQKGYIERVVSRFGMQNAKAVSTPLAPHFRLSGKQSPTTTVEKDHMDRVPYASAVGSL 594
YL+QK YIE+V+ RF M +AK VST LA HFRLS P + + ++M RVPY+SAV SL
Sbjct: 973 YLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSL 1032
Query: 595 MYAMVCTRPDISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGT----------------- 637
MYAMVC+RPD+S A+SVVSR+MANPGK HW+AV+W+ RYL+GT
Sbjct: 1033 MYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSDGLVGY 1092
Query: 638 --------VIRVCALVETHVRVHGAPVSWRSMLQSTVALSTTEAEYMAMAEGVKKALWLW 689
+ R +L V G VSW++ LQ+TVALSTTEAEYMA++E K+ +WL
Sbjct: 1093 VDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLR 1152
Query: 690 GLLDDLGIKQECVDVWCDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEEGDVSLMKVH 749
GL +L C++++CDSQSAI L K+Q+ H RTKHID+RYHF+R VI EGDV + K+
Sbjct: 1153 GLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKIS 1212
Query: 750 TDDNPADMLTKVV 762
T DNP DM+TK V
Sbjct: 1213 THDNPVDMMTKPV 1225
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/797 (52%), Positives = 548/797 (68%), Gaps = 55/797 (6%)
Query: 1 MVENKTGRKLKTLRSDNGIEYTDGAFKEFCNQEGIVRHWTVVNTPQQNGVAERLNRTLLE 60
+VE +TG+K+K LR+DNG+E+ +G F EFC GI RH T+ PQQNGVAERLNRT+LE
Sbjct: 235 LVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTILE 294
Query: 61 KARCMRSNSGL--GVEWWAESVATACYIVNRSPHSSLDGGIPYEVWSGEHVDYGRLRVFG 118
+ARCM SN+GL E W E+ +TACY++NRSPHSSL+ IP E+WSG +DY LR+FG
Sbjct: 295 RARCMLSNAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPIDYSNLRIFG 354
Query: 119 CTAYYHIKGNKLDNRAKKAIFLGYATGVKGYRLWCTEDK--KFVISRDVVFDESSIVAMA 176
C AY H+ KL RA K IFLGYA+ KGYRLWC+E K + ++SRDV F+E ++++
Sbjct: 355 CPAYAHVNDGKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILSRDVTFNEDALLSSG 414
Query: 177 KATVPSCGDVGSTKAQVVEVEAEDQRVSRNHDQVKHQDKTQDEEIDEPDHEEVQGEGTQV 236
K + S + + +VE E + V+ N D T + ID DH G+ +
Sbjct: 415 KQSSVSSSSTNNLQGTSEKVELELKSVAPNVDVP--SSSTTESSID--DH----GDDHPI 466
Query: 237 LQQQQQDVSVHTRPKRLYKPVQRLGSDKPLRHYWQTNLVEYALSV-----EDDEPITFKQ 291
QQ++ +++ R +R K R Y NL YALS+ +D EP ++ +
Sbjct: 467 QQQEEYNIA-RDRTRRQIKLPAR---------YTDDNLTAYALSIAQEVNDDVEPASYSE 516
Query: 292 AITAAERESWLVAIQEEMESLHKNQTWEVVPLPEGKFVIGCKWVYKKKEDSSEIKGTRYK 351
A++ + WLVA+ EE+ESLHKN TW + LP+GK + CKW+YKKK+ ++ R K
Sbjct: 517 AVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCK 576
Query: 352 ARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLELEQLDVKTAFLHGDLEEE 411
ARLV KG+ QKEG+D+NEIFSPVV+HTSIR+LL+ VA DLELEQLDVKTAFLHG+LEEE
Sbjct: 577 ARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEE 636
Query: 412 IYMAQPEGYKVEGKENQVCRLRKSLYRLKQSPRQWYKQFDFFMLKHSFRRSEYDFCVYIK 471
IYM QPEG+ V KE+ VC+L+KSLY LKQ+PRQWYK+FD FM+ + RS+YD C+Y +
Sbjct: 637 IYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQ 696
Query: 472 KLREGDFIYLLLYVDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSS 531
+ +G FIYLLLYVDDMLIASR I+KLK+QL+ EFEMK++GAAKKILGMEI R+R
Sbjct: 697 QFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQV 756
Query: 532 KKLYLNQKGYIERVVSRFGMQNAKAVSTPLAPHFRLSGKQSPTTTVEKDHMDRVPYASAV 591
KL+L+Q+ YIER++ RF M N K VSTPLA HF+LS P T E + M VPYASAV
Sbjct: 757 GKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAV 816
Query: 592 GSLMYAMVCTRPDISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGT-------------V 638
GSLMYAMVCTRPD++ AVS+VSR+M NPGK HW AVKW+ RYLKGT
Sbjct: 817 GSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATT 876
Query: 639 IRVCALVETH---------------VRVHGAPVSWRSMLQSTVALSTTEAEYMAMAEGVK 683
V V++ + + +SW++ LQS ALSTTEAEY++ EGVK
Sbjct: 877 NNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVK 936
Query: 684 KALWLWGLLDDLGIKQECVDVWCDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEEGDV 743
+ALW+ GL+ +LG+ Q+ + V+CDSQSAIHL KN +H +TKHIDV++HF+RD++ G+V
Sbjct: 937 EALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEV 996
Query: 744 SLMKVHTDDNPADMLTK 760
L KVHT +NPADMLTK
Sbjct: 997 LLQKVHTSENPADMLTK 1013
>ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/806 (52%), Positives = 545/806 (67%), Gaps = 70/806 (8%)
Query: 1 MVENKTGRKLKTLRSDNGIEYTDGAFKEFCNQEGIVRHWTVVNTPQQNGVAERLNRTLLE 60
M+E +T RK+K LR+DNG E+ AF ++C QEGIVRH T+ +TPQQNGVAER+NRT++
Sbjct: 538 MIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIIS 597
Query: 61 KARCMRSNSGLGVEWWAESVATACYIVNRSPHSSLDGGIPYEVWSGEHVDYGRLRVFGCT 120
+ARCM S++ + +WAE+ +TACY++NRSP L+ P EVWSG DY +L+VFGCT
Sbjct: 598 RARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCT 657
Query: 121 AYYHIKGNKLDNRAKKAIFLGYATGVKGYRLWCTEDKKFVISRDVVFDESSIVAMAKATV 180
AY H+ KL+ RA K +FLGY +GVKGY+LW E K +SR VVF+ES M ++
Sbjct: 658 AYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNES---VMFTNSL 714
Query: 181 PSCGDVGSTKAQVVEVEAEDQRVSRNHDQVKHQDKTQDEEIDEPDHEE------------ 228
PS ++ + R H QV+H D ++ EP HE+
Sbjct: 715 PS-------------EHVPEKELQRMHMQVEHVDDDTGVQV-EPVHEQDDHNNDVADDDA 760
Query: 229 --VQGEGTQVLQQQQQDVSVHTRPKRLYKPVQRLGSDKPLRHYWQTNLVEYALSVEDD-- 284
+ +LQ +++ + KR KP +RL + NL YALS +
Sbjct: 761 HDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE--------ECNLSYYALSCAEQVE 812
Query: 285 ---EPITFKQAITAAERESWLVAIQEEMESLHKNQTWEVVPLPEGKFVIGCKWVYKKKED 341
EP T+K+A+ + E+W+ A+ EEM+SL KN TWEVVPLP+ K I CKW++K+KE
Sbjct: 813 NVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEG 872
Query: 342 SSEIKGTRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLELEQLDVKT 401
S + +YKARLVA+GY+Q GVDYN++FSPVVKH+SIR LSIVA DLELEQLDVKT
Sbjct: 873 LSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKT 932
Query: 402 AFLHGDLEEEIYMAQPEGYKVEGKENQVCRLRKSLYRLKQSPRQWYKQFDFFMLKHSFRR 461
AFLHG+LEE+IYM QPEG+ V GKE VC+L++SLY LKQSPRQW K+FD FML HSF+R
Sbjct: 933 AFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKR 992
Query: 462 SEYDFCVYIKKLREGDFIYLLLYVDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKIL 521
S+YD CVYIK + G IYLLLYVDDMLIA++S +EI KLK LS EF+MKD+G+AKKIL
Sbjct: 993 SKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKIL 1051
Query: 522 GMEIKRERSSKKLYLNQKGYIERVVSRFGMQNAKAVSTPLAPHFRLSGKQSPTTTVEKDH 581
GMEI R+R S L+L+Q YI++V+ RF MQNAKAVSTP+APHF+LS Q P+ E ++
Sbjct: 1052 GMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEY 1111
Query: 582 MDRVPYASAVGSLMYAMVCTRPDISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVIRV 641
M RVPY+SAVGSLMYAMVC+RPD+S A+S+VSR+M+NPGK HW AV+W+ RYL+GT
Sbjct: 1112 MSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSC 1171
Query: 642 CALVETHVRVHG-------------------------APVSWRSMLQSTVALSTTEAEYM 676
T + G VSWR+ LQS VALSTTEAEYM
Sbjct: 1172 LKFGRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYM 1231
Query: 677 AMAEGVKKALWLWGLLDDLGIKQECVDVWCDSQSAIHLAKNQVHHARTKHIDVRYHFVRD 736
A+ E K+ +WL GL +L + C+ + CDSQSAI+L K+Q+ H RTKHID++YHFVRD
Sbjct: 1232 AICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRD 1291
Query: 737 VIEEGDVSLMKVHTDDNPADMLTKVV 762
VIEEG + + K+ T DNPADM+TK +
Sbjct: 1292 VIEEGKLKVCKISTHDNPADMMTKPI 1317