BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4260.1
(574 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010246761.1 PREDICTED: regulator of nonsense transcripts UPF3... 525 e-178
XP_010246760.1 PREDICTED: regulator of nonsense transcripts UPF3... 521 e-176
XP_010246764.1 PREDICTED: regulator of nonsense transcripts UPF3... 491 e-165
>XP_010246761.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X2
[Nelumbo nucifera]
Length = 602
Score = 525 bits (1352), Expect = e-178, Method: Compositional matrix adjust.
Identities = 327/593 (55%), Positives = 397/593 (66%), Gaps = 76/593 (12%)
Query: 1 MKDQFDRTKVVLRHLPPAFTKTALIEQIDGRFAGRYNWVSFRPGKTSHKRLQYSRAYLDF 60
MKD FDRTKVVLRHLPP +++AL EQIDGRFAGRY W+ FR GK S K +YSRAY+DF
Sbjct: 1 MKDPFDRTKVVLRHLPPTLSQSALTEQIDGRFAGRYKWICFRSGKNSQKHQRYSRAYIDF 60
Query: 61 KKPDDVFEFAEFFNGRTFVYDKGSQFKTIVEYAPSQRVPKQRSKKDGREGTIYKDPEYLE 120
K+P+DV EFAEFF+G FV +KGSQFKTIVEYAPSQRV K SKKDGREGTI+KDPEYLE
Sbjct: 61 KRPEDVIEFAEFFDGHIFVNEKGSQFKTIVEYAPSQRVAKSWSKKDGREGTIFKDPEYLE 120
Query: 121 FLERLAKPVEYLPSAEIQLERREAERAGAAKEAPIVTPLMEFIRQKRAAK---------- 170
FL+ ++KPVE LPSAE+QLERREAERAGAAKE PIVTPLM+F+RQKRAAK
Sbjct: 121 FLDLISKPVENLPSAEVQLERREAERAGAAKEVPIVTPLMDFVRQKRAAKGGSQRSLSNG 180
Query: 171 ----------------------------SVSQYVLRDGTKSSTGKEKPTYILVPRRENQQ 202
S S YVLRD K+++GK+K TYILVPRRE+Q+
Sbjct: 181 KLSRRATGTSPGSSGSSSTKRGSEKRRVSTSMYVLRDSVKNTSGKDKSTYILVPRREDQE 240
Query: 203 LSDKSISVASASGTETAQDEIGTSGPADPTKKKILLLKGKERESTHASE-GISPQLSVTP 261
L+DKS+S+ ASGTETA+DE T G AD KKK+LLLKGKERE +A E G+S Q SV
Sbjct: 241 LTDKSVSLVIASGTETAEDEKAT-GSADTGKKKVLLLKGKEREIPNAPEVGVSQQQSVIS 299
Query: 262 PMKNSVGTSNFKQSQRRESSGRMVKSILSNKDAQTG---------QQILSSNFDKDKRPP 312
P++NS ++ FKQSQRR+ SGRM++SILS K+A+ G QQ + N +K+KRPP
Sbjct: 300 PIRNSPNSTAFKQSQRRDVSGRMIRSILS-KEARQGQSTTAIQSDQQSQTMNLEKEKRPP 358
Query: 313 RSTNIYSA-----SGVSRATYNSDFDSKRGIDDKTVGNDDRSFGFSTDKQERRTRNKDRP 367
R T + S S +S+A + D + KR DDK ND +KQE+R RNKDRP
Sbjct: 359 RPTTMRSVLKDHLSSISQAASSCDTEMKRIQDDKVAVNDVHGVSSVNEKQEKRARNKDRP 418
Query: 368 DRGVWT-LRRSDGSHASD-----------ESLSDIREEGTMVTRTVPVRGVSKPGDDPV- 414
DRGVWT LRRSD SHASD + LSD E T+ P G K GDD +
Sbjct: 419 DRGVWTPLRRSDISHASDDSSSSSFSGPTQVLSDSLEGMTINQLVAP--GAGKLGDDVLD 476
Query: 415 ETDSNNKLSAPSGRPRNGDAATHYSRSGRGGN-SSAYDLSSSNAELKVDMLRTNRSGEFK 473
E +S NK PSG+ R+ +A+ H SR GRGGN SSAYD S + E+K ++ ++ GE K
Sbjct: 477 EPESGNKSFFPSGKARSQEASVHNSRVGRGGNVSSAYD--SCSHEVKSEIHHASK-GEVK 533
Query: 474 SLGGGRSNSSSVENGSHRYAGRRGPAAHAIKDMDG-SVGASDVKPSRREASMG 525
++G GRSN SS ENGSHR RRG + H KD+DG S+ SD KPS+R + G
Sbjct: 534 TIGSGRSNFSSAENGSHRQFSRRG-SVHGGKDIDGNSLSTSDGKPSKRGNATG 585
>XP_010246760.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X1
[Nelumbo nucifera]
Length = 612
Score = 521 bits (1342), Expect = e-176, Method: Compositional matrix adjust.
Identities = 328/602 (54%), Positives = 399/602 (66%), Gaps = 84/602 (13%)
Query: 1 MKDQFDRTKVVLRHLPPAFTKTALIEQIDGRFAGRYNWVSFRPGKTSHKRLQYSRAYLDF 60
MKD FDRTKVVLRHLPP +++AL EQIDGRFAGRY W+ FR GK S K +YSRAY+DF
Sbjct: 1 MKDPFDRTKVVLRHLPPTLSQSALTEQIDGRFAGRYKWICFRSGKNSQKHQRYSRAYIDF 60
Query: 61 KKPDDVFEFAEFFNGRTFVYDKGSQFKTIVEYAPSQRVPKQRSKKDGREGTIYKDPEYLE 120
K+P+DV EFAEFF+G FV +KGSQFKTIVEYAPSQRV K SKKDGREGTI+KDPEYLE
Sbjct: 61 KRPEDVIEFAEFFDGHIFVNEKGSQFKTIVEYAPSQRVAKSWSKKDGREGTIFKDPEYLE 120
Query: 121 FLERLAKPVEYLPSAEIQLERREAERAGAAKEAPIVTPLMEFIRQKRAAK---------- 170
FL+ ++KPVE LPSAE+QLERREAERAGAAKE PIVTPLM+F+RQKRAAK
Sbjct: 121 FLDLISKPVENLPSAEVQLERREAERAGAAKEVPIVTPLMDFVRQKRAAKGGSQRSLSNG 180
Query: 171 ----------------------------SVSQYVLRDGTKSSTGKEKPTYILVPRRENQQ 202
S S YVLRD K+++GK+K TYILVPRRE+Q+
Sbjct: 181 KLSRRATGTSPGSSGSSSTKRGSEKRRVSTSMYVLRDSVKNTSGKDKSTYILVPRREDQE 240
Query: 203 LSDKSISVASASGTETAQDE--------IGT-SGPADPTKKKILLLKGKERESTHASE-G 252
L+DKS+S+ ASGTETA+DE I T +G AD KKK+LLLKGKERE +A E G
Sbjct: 241 LTDKSVSLVIASGTETAEDEKVPKTDGAISTATGSADTGKKKVLLLKGKEREIPNAPEVG 300
Query: 253 ISPQLSVTPPMKNSVGTSNFKQSQRRESSGRMVKSILSNKDAQTG---------QQILSS 303
+S Q SV P++NS ++ FKQSQRR+ SGRM++SILS K+A+ G QQ +
Sbjct: 301 VSQQQSVISPIRNSPNSTAFKQSQRRDVSGRMIRSILS-KEARQGQSTTAIQSDQQSQTM 359
Query: 304 NFDKDKRPPRSTNIYSA-----SGVSRATYNSDFDSKRGIDDKTVGNDDRSFGFSTDKQE 358
N +K+KRPPR T + S S +S+A + D + KR DDK ND +KQE
Sbjct: 360 NLEKEKRPPRPTTMRSVLKDHLSSISQAASSCDTEMKRIQDDKVAVNDVHGVSSVNEKQE 419
Query: 359 RRTRNKDRPDRGVWT-LRRSDGSHASD-----------ESLSDIREEGTMVTRTVPVRGV 406
+R RNKDRPDRGVWT LRRSD SHASD + LSD E T+ P G
Sbjct: 420 KRARNKDRPDRGVWTPLRRSDISHASDDSSSSSFSGPTQVLSDSLEGMTINQLVAP--GA 477
Query: 407 SKPGDDPV-ETDSNNKLSAPSGRPRNGDAATHYSRSGRGGN-SSAYDLSSSNAELKVDML 464
K GDD + E +S NK PSG+ R+ +A+ H SR GRGGN SSAYD S + E+K ++
Sbjct: 478 GKLGDDVLDEPESGNKSFFPSGKARSQEASVHNSRVGRGGNVSSAYD--SCSHEVKSEIH 535
Query: 465 RTNRSGEFKSLGGGRSNSSSVENGSHRYAGRRGPAAHAIKDMDG-SVGASDVKPSRREAS 523
++ GE K++G GRSN SS ENGSHR RRG + H KD+DG S+ SD KPS+R +
Sbjct: 536 HASK-GEVKTIGSGRSNFSSAENGSHRQFSRRG-SVHGGKDIDGNSLSTSDGKPSKRGNA 593
Query: 524 MG 525
G
Sbjct: 594 TG 595
>XP_010246764.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X5
[Nelumbo nucifera]
Length = 575
Score = 491 bits (1265), Expect = e-165, Method: Compositional matrix adjust.
Identities = 314/592 (53%), Positives = 378/592 (63%), Gaps = 101/592 (17%)
Query: 1 MKDQFDRTKVVLRHLPPAFTKTALIEQIDGRFAGRYNWVSFRPGKTSHKRLQYSRAYLDF 60
MKD FDRTKVVLRHLPP +++AL EQIDGRFAGRY W+ FR GK S K +YSRAY+DF
Sbjct: 1 MKDPFDRTKVVLRHLPPTLSQSALTEQIDGRFAGRYKWICFRSGKNSQKHQRYSRAYIDF 60
Query: 61 KKPDDVFEFAEFFNGRTFVYDKGSQFKTIVEYAPSQRVPKQRSKKDGREGTIYKDPEYLE 120
K+P+DV EFAEFF+G FV +KGSQFKTIVEYAPSQRV K SKKDGREGTI+KDPEYLE
Sbjct: 61 KRPEDVIEFAEFFDGHIFVNEKGSQFKTIVEYAPSQRVAKSWSKKDGREGTIFKDPEYLE 120
Query: 121 FLERLAKPVEYLPSAEIQLERREAERAGAAKEAPIVTPLMEFIRQKRAAK---------- 170
FL+ ++KPVE LPSAE+QLERREAERAGAAKE PIVTPLM+F+RQKRAAK
Sbjct: 121 FLDLISKPVENLPSAEVQLERREAERAGAAKEVPIVTPLMDFVRQKRAAKGGSQRSLSNG 180
Query: 171 ----------------------------SVSQYVLRDGTKSSTGKEKPTYILVPRRENQQ 202
S S YVLRD K+++GK+K TYILVPRRE+Q+
Sbjct: 181 KLSRRATGTSPGSSGSSSTKRGSEKRRVSTSMYVLRDSVKNTSGKDKSTYILVPRREDQE 240
Query: 203 LSDKSISVASASGTETAQDEIGTSGPADPTKKKILLLKGKERESTHASEGISPQLSVTPP 262
L+DKS+S+ ASGTETA+DE T G AD KKK+LLLKGKERE
Sbjct: 241 LTDKSVSLVIASGTETAEDEKAT-GSADTGKKKVLLLKGKERE----------------- 282
Query: 263 MKNSVGTSNFKQSQRRESSGRMVKSILSNKDAQTG---------QQILSSNFDKDKRPPR 313
SQRR+ SGRM++SILS K+A+ G QQ + N +K+KRPPR
Sbjct: 283 ---------IPNSQRRDVSGRMIRSILS-KEARQGQSTTAIQSDQQSQTMNLEKEKRPPR 332
Query: 314 STNIYSA-----SGVSRATYNSDFDSKRGIDDKTVGNDDRSFGFSTDKQERRTRNKDRPD 368
T + S S +S+A + D + KR DDK ND +KQE+R RNKDRPD
Sbjct: 333 PTTMRSVLKDHLSSISQAASSCDTEMKRIQDDKVAVNDVHGVSSVNEKQEKRARNKDRPD 392
Query: 369 RGVWT-LRRSDGSHASD-----------ESLSDIREEGTMVTRTVPVRGVSKPGDDPV-E 415
RGVWT LRRSD SHASD + LSD E T+ P G K GDD + E
Sbjct: 393 RGVWTPLRRSDISHASDDSSSSSFSGPTQVLSDSLEGMTINQLVAP--GAGKLGDDVLDE 450
Query: 416 TDSNNKLSAPSGRPRNGDAATHYSRSGRGGN-SSAYDLSSSNAELKVDMLRTNRSGEFKS 474
+S NK PSG+ R+ +A+ H SR GRGGN SSAYD S + E+K ++ ++ GE K+
Sbjct: 451 PESGNKSFFPSGKARSQEASVHNSRVGRGGNVSSAYD--SCSHEVKSEIHHASK-GEVKT 507
Query: 475 LGGGRSNSSSVENGSHRYAGRRGPAAHAIKDMDG-SVGASDVKPSRREASMG 525
+G GRSN SS ENGSHR RRG + H KD+DG S+ SD KPS+R + G
Sbjct: 508 IGSGRSNFSSAENGSHRQFSRRG-SVHGGKDIDGNSLSTSDGKPSKRGNATG 558