BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4480.1
(162 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010273523.1 PREDICTED: pre-mRNA-processing protein 40A [Nelum... 147 3e-38
XP_007018442.1 Pre-mRNA-processing protein 40A isoform 7 [Theobr... 142 3e-36
XP_007018443.1 Pre-mRNA-processing protein 40A isoform 8 [Theobr... 142 3e-36
>XP_010273523.1 PREDICTED: pre-mRNA-processing protein 40A [Nelumbo nucifera]
XP_010273530.1 PREDICTED: pre-mRNA-processing protein
40A [Nelumbo nucifera]
Length = 1046
Score = 147 bits (372), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 109/165 (66%), Gaps = 8/165 (4%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIEI 60
MT IERADASTVWKEF TP+GRKYYYNK TKQSKWT+P+ELKLAREQA+KAA+ G Q E
Sbjct: 253 MTPIERADASTVWKEFTTPEGRKYYYNKATKQSKWTMPDELKLAREQAEKAASQGIQSET 312
Query: 61 GVASQPPASLTAPSLETPS-------ISSSTTSGKTSSPVEVNPIAAVVNTPTVVASGSP 113
+ASQ +++T S+ETPS +S+ TS SSPV V P+ A +N VV+SGS
Sbjct: 313 TMASQTASTVTVSSVETPSAAANPLGATSAVTSIVASSPVPVTPVVAAINPLPVVSSGSQ 372
Query: 114 SVPALSSGLPENGVAVETPVATVTALPTPC-GDAGATDALATATT 157
+VP + + + V V +P A + +P G AG A A+A
Sbjct: 373 AVPVVPGAVTTSAVGVNSPAAAIATVPVSVPGGAGVPVAFASANN 417
>XP_007018442.1 Pre-mRNA-processing protein 40A isoform 7 [Theobroma cacao]
EOY15667.1 Pre-mRNA-processing protein 40A isoform 7
[Theobroma cacao]
Length = 787
Score = 142 bits (357), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 99/143 (69%), Gaps = 5/143 (3%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIEI 60
MT IERADASTVWKEF TP+GRKYYYNKVTKQSKWTIPEELKLAREQAQ A+ G +
Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDT 314
Query: 61 GVASQPPASLTAPSLETP--SISSSTTSGKTSSPVEVNPIAAVVN-TPTVVASGSPSVPA 117
GVASQ P + S E P +I S+ + + SSPV V P+AAV N +PT+V SGS VP
Sbjct: 315 GVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLV-SGSTVVP- 372
Query: 118 LSSGLPENGVAVETPVATVTALP 140
+S N V++P VT LP
Sbjct: 373 VSQSAATNASEVQSPAVAVTPLP 395
>XP_007018443.1 Pre-mRNA-processing protein 40A isoform 8 [Theobroma cacao]
EOY15668.1 Pre-mRNA-processing protein 40A isoform 8
[Theobroma cacao]
Length = 789
Score = 142 bits (357), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 99/143 (69%), Gaps = 5/143 (3%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIEI 60
MT IERADASTVWKEF TP+GRKYYYNKVTKQSKWTIPEELKLAREQAQ A+ G +
Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDT 314
Query: 61 GVASQPPASLTAPSLETP--SISSSTTSGKTSSPVEVNPIAAVVN-TPTVVASGSPSVPA 117
GVASQ P + S E P +I S+ + + SSPV V P+AAV N +PT+V SGS VP
Sbjct: 315 GVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLV-SGSTVVP- 372
Query: 118 LSSGLPENGVAVETPVATVTALP 140
+S N V++P VT LP
Sbjct: 373 VSQSAATNASEVQSPAVAVTPLP 395