BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0090.1
(413 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010278175.1 PREDICTED: DNA-directed RNA polymerase I subunit ... 536 e-176
XP_010659082.1 PREDICTED: DNA-directed RNA polymerase I subunit ... 518 e-171
XP_010659083.1 PREDICTED: DNA-directed RNA polymerase I subunit ... 515 e-170
>XP_010278175.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Nelumbo
nucifera]
Length = 1350
Score = 536 bits (1380), Expect = e-176, Method: Compositional matrix adjust.
Identities = 256/368 (69%), Positives = 311/368 (84%), Gaps = 11/368 (2%)
Query: 11 DYDNLRELFKPHIESFDYFLEFGLEAMLLHIKPIEVRDSEDE--------KHELYRPQKQ 62
DY++LRELFKPHI+SFDYF++ GLE ML+HIKP+E+ DS + K ELY PQK+
Sbjct: 10 DYESLRELFKPHIDSFDYFVDAGLETMLMHIKPVEIVDSFTKTKLRIWFGKSELYPPQKE 69
Query: 63 RHNSALSDELYPFECRQGGLSYSGKFLIDVNIQIGNRKPVREKFNFGQLPIMLKSKLCHL 122
R + ++ D L PFECRQ G+SYSGKF++DV Q N VREKF FGQLPIMLKSK+CHL
Sbjct: 70 RISKSIRDPLLPFECRQAGISYSGKFMVDVCFQYNNGVVVREKFGFGQLPIMLKSKVCHL 129
Query: 123 RDADPRTLVSFKEEATEMGGYFILNGLERLVRLVIMPKRNYPMNVERSSFREKREGYSDK 182
R ADP+ LVS+KEEATEMGGYFILNGLERLVRL+IMPKRNYPM++ R+SFRE+REGY+DK
Sbjct: 130 RGADPQKLVSYKEEATEMGGYFILNGLERLVRLLIMPKRNYPMSMVRNSFRERREGYTDK 189
Query: 183 AVVIRCVRDDLSALTVRLYYLQNGSARLGFWIEGREFFLPVGLVLKALIDTTDLEIYESL 242
AVVIRCVR+D SA+TV+LY+LQNGSARLGFWI G+E+ LPVG+VLKALIDT+D EIY SL
Sbjct: 190 AVVIRCVREDQSAVTVKLYHLQNGSARLGFWIRGKEYLLPVGIVLKALIDTSDHEIYVSL 249
Query: 243 TSCYNEMHKQREGVVGTQLVGERVKIILDEVKEMS--TRSQCLQHLGQHFQPVIGGLEAE 300
T C++E++++ +G VGTQLVGERVKIILDEV+++S T QC+QH+G++FQ ++ GLE E
Sbjct: 250 T-CHSEVNQKAKGTVGTQLVGERVKIILDEVRDLSLFTHLQCIQHIGEYFQAIMDGLETE 308
Query: 301 SHFAVGEIILKDYVLVHLENNHDKFNLLIFMLQKLFAFVDQTASLDNTDALQNHEVLLPG 360
SH VGE++LKDY+ VHL+NNHDKFNLLIFMLQKLF+ VDQT DN D LQN EVLLPG
Sbjct: 309 SHSVVGEVVLKDYIFVHLDNNHDKFNLLIFMLQKLFSLVDQTTVPDNPDTLQNQEVLLPG 368
Query: 361 HLITLYLK 368
HLIT+YLK
Sbjct: 369 HLITIYLK 376
>XP_010659082.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X1
[Vitis vinifera]
Length = 1178
Score = 518 bits (1334), Expect = e-171, Method: Compositional matrix adjust.
Identities = 249/378 (65%), Positives = 310/378 (82%), Gaps = 12/378 (3%)
Query: 3 AMEKIKSS--DYDNLRELFKPHIESFDYFLEFGLEAMLLHIKPIEVRDSEDEKH------ 54
A+EK+ ++ DY+ LRELF+ HI+SFD+ +EFGLE +L+ +KP+EV DS ++
Sbjct: 6 ALEKMATAGPDYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKLRIWFG 65
Query: 55 --ELYRPQKQRHNSALSDELYPFECRQGGLSYSGKFLIDVNIQIGNRKPVREKFNFGQLP 112
ELY PQK+R + D LYPFECRQ +SYSGK L DV Q GN +REKFN GQ P
Sbjct: 66 QPELYPPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFP 125
Query: 113 IMLKSKLCHLRDADPRTLVSFKEEATEMGGYFILNGLERLVRLVIMPKRNYPMNVERSSF 172
IMLKSKLCHLR ADP+ LVS KEE++EMGGYFILNGLER+VRL+I+PKRNYPM++ R+SF
Sbjct: 126 IMLKSKLCHLRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSF 185
Query: 173 REKREGYSDKAVVIRCVRDDLSALTVRLYYLQNGSARLGFWIEGREFFLPVGLVLKALID 232
R++REGY+DKAVVIRCVR+D SA+TV+LYYL+NGSARLGFWI+GRE+ LPVG+VLKALID
Sbjct: 186 RDRREGYTDKAVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALID 245
Query: 233 TTDLEIYESLTSCYNEMHKQREGVVGTQLVGERVKIILDEVKEMS--TRSQCLQHLGQHF 290
TTD EIYESLT CY+E ++ +G VGTQLVGERVKIILDEV+++S TR QCLQH+G+HF
Sbjct: 246 TTDHEIYESLTCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHF 305
Query: 291 QPVIGGLEAESHFAVGEIILKDYVLVHLENNHDKFNLLIFMLQKLFAFVDQTASLDNTDA 350
Q V+ GLE ES+ V + +L++Y+ VHL+NN+DKFNLLIFM+QKLF+ +DQT+ DN D
Sbjct: 306 QLVMDGLENESYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDV 365
Query: 351 LQNHEVLLPGHLITLYLK 368
LQN EVLLPGHLIT+YLK
Sbjct: 366 LQNQEVLLPGHLITIYLK 383
>XP_010659083.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X2
[Vitis vinifera] XP_010659084.1 PREDICTED: DNA-directed
RNA polymerase I subunit RPA2 isoform X2 [Vitis
vinifera]
Length = 1169
Score = 515 bits (1326), Expect = e-170, Method: Compositional matrix adjust.
Identities = 246/368 (66%), Positives = 303/368 (82%), Gaps = 10/368 (2%)
Query: 11 DYDNLRELFKPHIESFDYFLEFGLEAMLLHIKPIEVRDSEDEKH--------ELYRPQKQ 62
DY+ LRELF+ HI+SFD+ +EFGLE +L+ +KP+EV DS ++ ELY PQK+
Sbjct: 7 DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKLRIWFGQPELYPPQKE 66
Query: 63 RHNSALSDELYPFECRQGGLSYSGKFLIDVNIQIGNRKPVREKFNFGQLPIMLKSKLCHL 122
R + D LYPFECRQ +SYSGK L DV Q GN +REKFN GQ PIMLKSKLCHL
Sbjct: 67 RSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHL 126
Query: 123 RDADPRTLVSFKEEATEMGGYFILNGLERLVRLVIMPKRNYPMNVERSSFREKREGYSDK 182
R ADP+ LVS KEE++EMGGYFILNGLER+VRL+I+PKRNYPM++ R+SFR++REGY+DK
Sbjct: 127 RGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDK 186
Query: 183 AVVIRCVRDDLSALTVRLYYLQNGSARLGFWIEGREFFLPVGLVLKALIDTTDLEIYESL 242
AVVIRCVR+D SA+TV+LYYL+NGSARLGFWI+GRE+ LPVG+VLKALIDTTD EIYESL
Sbjct: 187 AVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESL 246
Query: 243 TSCYNEMHKQREGVVGTQLVGERVKIILDEVKEMS--TRSQCLQHLGQHFQPVIGGLEAE 300
T CY+E ++ +G VGTQLVGERVKIILDEV+++S TR QCLQH+G+HFQ V+ GLE E
Sbjct: 247 TCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENE 306
Query: 301 SHFAVGEIILKDYVLVHLENNHDKFNLLIFMLQKLFAFVDQTASLDNTDALQNHEVLLPG 360
S+ V + +L++Y+ VHL+NN+DKFNLLIFM+QKLF+ +DQT+ DN D LQN EVLLPG
Sbjct: 307 SYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPG 366
Query: 361 HLITLYLK 368
HLIT+YLK
Sbjct: 367 HLITIYLK 374