BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0300.1
(290 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 115 3e-25
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 114 6e-25
AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-clas... 113 1e-24
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 18/287 (6%)
Query: 17 TNIFNLYTILEK--LNDTNFVQWERNLRKVLGESVE--ILDIPIP-VLSETSSDEERKQV 71
T+ F L +ILEK LN TNF W RNLR VL + + +L+ PIP V +E ++ +
Sbjct: 10 TSSFALRSILEKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPTENAAAAIKTAY 69
Query: 72 DDIRRKSASVTGLMLMAMERKYIDMFIEMEAYTIIRGLREVFGTQCRIKRFRITMVTLGI 131
+S V+ LML AM F +EAY +I L+ +F TQ R +RF I+ G
Sbjct: 70 KKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTERFEISKNLFGC 129
Query: 132 RLEKGKPVRYHVLEMIDHFKDMEWMGSPMPVVMAVDIILNSLDERFQDVVANFEDKFGRV 191
+L +G PV HV++M+ + + +E +G P+ +A D+IL SL E + + NF
Sbjct: 130 KLAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDLILASLPESYGQFILNFHMNGLDK 189
Query: 192 SFESLLAILEVAESRFSTPETLEEILGVQETVNTGTEDVRRRKPSGK-----RMGRKAPR 246
+ L +L+ AE S + ++ VQ++ + + K GK ++ P+
Sbjct: 190 NLTELHMMLKTAEG--SVKKCNNHVIMVQKSTSFKKKAKTWIKKKGKAKVSDKIQTDKPK 247
Query: 247 PRT---ILPNKRCLVCGSTSHIRLRDCPRFL--EELNDGAGSSSQGK 288
+T C C H + R+C ++L ++ N G +S+ G+
Sbjct: 248 TKTKSGPTQENECFYCKELGHWK-RNCKKYLADQKRNGGTKTSTTGE 293
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 17/287 (5%)
Query: 17 TNIFNLYTIL--EKLNDTNFVQWERNLRKVLGESVE--ILDIPIP-VLSETSSDEERKQV 71
T+ F L +IL EKLN TNF W RNLR VL + + +L+ PIP V ++ ++ +
Sbjct: 93 TSSFALRSILKKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPADNAAATLKSAY 152
Query: 72 DDIRRKSASVTGLMLMAMERKYIDMFIEMEAYTIIRGLREVFGTQCRIKRFRITMVTLGI 131
+S V+ LML AM F +EAY +I L+ +F TQ R KRF I+
Sbjct: 153 KKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTKRFEISKNLFSC 212
Query: 132 RLEKGKPVRYHVLEMIDHFKDMEWMGSPMPVVMAVDIILNSLDERFQDVVANFEDKFGRV 191
+L +G PV H+++M+ + + +E +G P+ +A D+IL SL + + NF
Sbjct: 213 KLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMNGLDK 272
Query: 192 SFESLLAILEVAESRFSTPETLEEILGVQETVNTGTEDVRRRKPSGKRM--GRKAPRPRT 249
+ L +L+ AE S + ++ VQ++ + + K GK++ G + +P+
Sbjct: 273 NLTELHMLLKTAED--SIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLDGIQTNKPKL 330
Query: 250 ILPN-----KRCLVCGSTSHIRLRDCPRFLEEL--NDGAGSSSQGKN 289
+ C C H + R+C ++L +L N G S+ G N
Sbjct: 331 KTKSGPTQENECFYCKEPGHWK-RNCKKYLADLKKNGGTKPSTSGIN 376
>AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92973.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 591
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 39/291 (13%)
Query: 20 FNLYTILEK--LNDTNFVQWERNLRKVLGESVEILDIPIPVLSETSSDEERKQVDDIRRK 77
FNL +ILEK L TNF+ W NLR VL + + + P L++ ++ Q + R+
Sbjct: 31 FNLRSILEKEKLTGTNFMDWYHNLRIVLRQEHKEFVLTQPFLADLPNNAPATQRREHERR 90
Query: 78 SA---SVTGLMLMAMERKYIDMFIEMEAYTIIRGLREVFGTQCRIKRFRITMVTLGIRLE 134
++ LML M K + ++A+TII GLR +F Q R +RF + RL
Sbjct: 91 CNEYLDISCLMLATMSLKLQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLA 150
Query: 135 KGKPVRYHVLEMIDHFKDMEWMGSPMPVVMAVDIILNSLDERFQDVVANFEDKFGRVSFE 194
+G PV HV++MI + + ++ +G P+ +A D+IL SL F+ + NF +
Sbjct: 151 EGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLA 210
Query: 195 SLLAILEVAESRFSTPETLEEILGVQETVNTGTEDVRRRKPSGKRMGRK----------- 243
L L+ AE S + ++G+ +RKP+ K+ G+K
Sbjct: 211 ELHVTLKTAEE--SIKKNSNHVMGMH-----------KRKPNNKKSGQKRKLNSDEITTT 257
Query: 244 ---APRPRTILPNK--RCLVCGSTSHIRLRDCPRFLEEL----NDGAGSSS 285
+ + P K C +C H + R+C ++LE+L DG S+S
Sbjct: 258 SNSKTKVQKTGPAKDAECFICKEIGHWK-RNCKKYLEQLKQKQQDGKSSTS 307